Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq40 127 3e-24 >seq40 Length=17677 Score = 127 bits (140), Expect = 3e-24 Identities = 327/490 (67%), Gaps = 6/490 (1%) Strand=Plus/Plus Query 203843 TCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTC 203902 || || |||||||| |||| | ||||| | | | | ||||||||||||||| || Sbjct 1067 TCGACGGTGAACTGGATGGGCGCCGAGGCAGCCATTGTGCGCAGATAGTACATGCCCGTT 1126 Query 203903 TTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCG 203962 || | |||| ||| ||| ||| | ||||| || | | || | || ||||||| Sbjct 1127 TTCAAGCCCATCTTCCAGCCGGCGAAATGCATCGATGTTATCTTACCCATTGTGGGGTCC 1186 Query 203963 GCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCAT 204021 |||||||||||||| |||||| ||| ||||| |||||| || || || |||||||| Sbjct 1187 TTCATGTGAATGTTCAAGGACTGGGATTGATCGAT-AAAGGCACCGCGGTCGGCGGCCAT 1245 Query 204022 ATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA-CGTCTCTGGTGTGTT 204080 | | ||| ||| |||||||| ||||||||| | | || || || ||| Sbjct 1246 TTGCACAATCTGGCGCTGGCTGATCTCCCAGACCGTCTTGTAGAGCGACT-TGATGTCAG 1304 Query 204081 GAGGCACATCTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGTC 204139 || | | | | || || ||| || ||| |||||| || | | || || | Sbjct 1305 CGGGGATGT-TGGGGATGTTCTGGATGGATCCGCCGTCGGCGATGATGCGGTTCTTCATG 1363 Query 204140 TCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGA 204199 | ||| ||| | ||||| || || ||| | ||| || |||| || |||| Sbjct 1364 TTGTCCGACCAGAGGCCCATATCGACGAGATCCTTGAGCAGCCAAGGATTGACGACCTGA 1423 Query 204200 AAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCG 204259 || || || | ||||| | |||| | | || |||| | |||||||| || Sbjct 1424 AATTCGCCCGCTAGCACACGACGGGAATATATATTCGAGGTGTAAGGTTCGAAGCATTCA 1483 Query 204260 TTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTG 204319 |||||||||| ||||| | || ||||||||||||||| |||| ||| ||||| ||| Sbjct 1484 TTGTTGCCGAGGATCTGGGATGTCGAGGCCGTGGGCATGGGGGCCACGAGGAGGGAATTG 1543 Query 204320 CGCACACCGT 204329 || ||||||| Sbjct 1544 CGAACACCGT 1553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795138730347920