Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1307 122 2e-22 seq1609 93.3 1e-13 seq1188 93.3 1e-13 seq59 87.8 4e-12 >seq1307 Length=69414 Score = 122 bits (134), Expect = 2e-22 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| || || ||||| || |||||||||| ||||||||| | | ||| | || ||| Sbjct 38634 AGGACGAGATGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCT 38575 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| |||||||||||||||||||| || || ||| || || ||| ||| Sbjct 38574 TCGAGCTGCTTGCCGGCGAAGATGAGACGCTGTTGATCGGGAGGGATACCCTCTTTGTCC 38515 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| || |||| |||||| | | || || |||| || || ||| Sbjct 38514 TGAATCTTGGCCTTTACATTGTCGATGGTGTCCGAAGACTCCACCTCCAGGGTAATGGTC 38455 Query 199598 TTACCCGTGAGAGTTTTCAC 199617 || || || || || || || Sbjct 38454 TTGCCAGTCAGGGTCTTGAC 38435 Score = 111 bits (122), Expect = 4e-19 Identities = 144/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| | ||| ||||| |||||||| || | |||||||| ||| || Sbjct 38363 CGAAGACGGAGGACCAAGTGAAGAGTGGACTCCTTCTGAATATTGTAGTCGCTCAAGGTG 38304 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || ||||||||||| || |||||||||||||| || ||||| ||||||| Sbjct 38303 CGACCGTCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGTTGATCCGGGGGAATTCCT 38244 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| ||| |||| ||||| | | || || || | Sbjct 38243 TCCTTGTCCTGGATCTTGGCCTTGACGTTATCGATCGTGTCGGAGGACTCCACCTCAAGG 38184 Query 199589 GTGATCGTCTTACCCGTGA 199607 ||||| ||||| || |||| Sbjct 38183 GTGATGGTCTTGCCAGTGA 38165 Score = 93.3 bits (102), Expect = 1e-13 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| || || || || || || || |||| ||||||||| | | || | |||||| Sbjct 38862 AGGACGAGATGTAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGTGTGCGGCCATCT 38803 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || | || || ||||||||||| | ||||| |||||||| || |||||| || Sbjct 38802 TCTAATTGTTTGCCGGCGAAGATCAAGCGCTGTTGGTCCGGGGGGATGCCTTCTTTATCT 38743 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| ||||||| | |||||| || | ||||| ||| Sbjct 38742 TGTATCTTGGCCTTGACATTGTCGATTGTGTCTGAAGATTCTACTTCGAGAGTGATGGTC 38683 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || || || || ||||| Sbjct 38682 TTGCCTGTCAAGGTCTTGACGAAGATTTG 38654 >seq1609 Length=13884 Score = 93.3 bits (102), Expect = 1e-13 Identities = 129/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 ||||||||| ||| || || ||| ||||| || || || |||||||| || ||||||| Sbjct 500 CCTTTTGGATGTTATAATCGCTCAAGGTCCTCCCGTCCTCGAGCTGCTTGCCCGCGAAGA 441 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | | |||||||||||||| || || || ||||| ||||| ||| || | Sbjct 440 TCAAGCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGT 381 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 ||| |||||| | | || || || | ||||| ||||| ||||| || ||||| || | Sbjct 380 CGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTTTTGACGA 321 Query 199620 A 199620 | Sbjct 320 A 320 >seq1188 Length=31586 Score = 93.3 bits (102), Expect = 1e-13 Identities = 129/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 |||| |||| ||| || || ||| ||||| || || || |||||||| || ||||||| Sbjct 1357 CCTTCTGGATGTTATAATCGCTCAAGGTCCTCCCGTCCTCGAGCTGCTTGCCCGCGAAGA 1416 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | | |||||||||||||| || || || ||||| ||||| ||| || | Sbjct 1417 TCAAGCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGT 1476 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 ||| |||||| | | ||| || || | ||||| ||||| ||||| || ||||| || | Sbjct 1477 CGATGGTGTCGGAGGATTCGACCTCGAGAGTGATGGTCTTGCCCGTCAGGGTTTTGACGA 1536 Query 199620 A 199620 | Sbjct 1537 A 1537 >seq59 Length=11125 Score = 87.8 bits (96), Expect = 4e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 199420 GACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTC 199479 ||| |||||||| || ||||||||||||| |||||||| | | ||| | || || || Sbjct 4354 GACCAGGTGGAGCGTGGACTCCTTTTGGATATTGTAGTCTGAGAGAGTGCGACCGTCCTC 4295 Query 199480 CAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530 |||||||| || |||||||| || || |||||||| || |||||||| Sbjct 4294 GAGCTGCTTGCCCGCGAAGATCAGGCGTTGCTGGTCAGGTGGGATTCCTTC 4244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178896571126019