Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1499 170 2e-37 seq1609 123 2e-23 seq1307 116 4e-21 seq59 86.0 6e-12 >seq1499 Length=34637 Score = 170 bits (188), Expect = 2e-37 Identities = 343/501 (68%), Gaps = 6/501 (1%) Strand=Plus/Plus Query 132603 TTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAG 132662 ||||||||| || || || ||||||||| ||||| || || ||| ||| || ||| Sbjct 5689 TTTTTGATAATCACCAACGCGTTTCTCAAAGAAATTGGTCTTGCCCGCCAGAGAGATGGA 5748 Query 132663 CGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATC-AGGTCGACGA 132721 | ||| || || || || || | | ||||| | ||| || | | | | ||| | Sbjct 5749 CTCCATGAAGTCAAACGGATTCGTCGCTTTGTAATACTTT-TGATTACCCAAGGCGAGCA 5807 Query 132722 GCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAGC 132780 |||| | |||||||||||| |||||||||||| |||| | || || | | | |||| Sbjct 5808 GCAGTCGGTCGGCCACGAATTCGATGTATTGCTTCATGAGGTTTGCGTTCATG-CCCAAT 5866 Query 132781 AGACGCACCGGC-AGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGAC 132839 |||| ||| || | || || || | ||| ||||||||| ||| || ||||||| Sbjct 5867 AGAC-CACAGGGTAAAGCCTCCGTCAAAAATTCCTGCTCGATGCTGACAGCTTCGGTGAT 5925 Query 132840 GATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGC 132899 || ||| ||| | || || || || ||| | || ||||| | ||||| Sbjct 5926 GACGTCCTGCACGGCCTGCGGACTGGGGCGGTGCTTTAGGTGTGAGAACAGGAGACAAGC 5985 Query 132900 AAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGG 132959 |||||| |||| ||||| |||| || |||||||||||| || |||| ||||| Sbjct 5986 AAAGTCAGTGTGCATTCCCTCATCCCGCGAGATGAGTTCGTTGGAAAAGGTCAGACCGGG 6045 Query 132960 CATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCC 133019 ||| || || || || || ||||| || | | || || ||| || ||||||| ||| Sbjct 6046 CATCAGACCACGCTTCTTCAGCCAGAAGACCGATGCAAATGAGCCAGAGAAGAAGATGCC 6105 Query 133020 CTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCA 133079 |||||| || || ||||| || || || | | | || || | | ||| ||| ||||| Sbjct 6106 CTCGACTGCAGCAAAAGCGACAAGTCGTTGGGCAAAAGTTGAGTTCTTGTCGGCTATCCA 6165 Query 133080 GCGCAGCGCCCATTCGGCCTT 133100 ||||| ||||| |||||||| Sbjct 6166 TCGCAGAGCCCAGTCGGCCTT 6186 Score = 156 bits (172), Expect = 4e-33 Identities = 200/276 (72%), Gaps = 3/276 (1%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 |||||||||||| || ||| || |||| || || | ||||||||| |||||| || Sbjct 6308 GTAGGTGTCGATCAGAAGCGAGTATGTTTCYGAATGAATGTTCTCCATCATGATTTGGAA 6367 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 |||||| ||||| || |||||| | ||||| || | ||| ||||| || || || Sbjct 6368 GCCGTAGAAGCAGCGAGCCTCGGGGATTTGCACCTCACCACTGAAGCGCTCAACGAGGTT 6427 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 |||||||| ||||| || |||||||| || |||| |||||| |||||| | || Sbjct 6428 CTCGTTGACAATGCCATCAGATGCGGCGAAGAATGCCAAGACGTGCGAGATGAAGTAACG 6487 Query 133347 CTCGTTGTCGTTCA---AGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||| | |||||| | | | ||||||| | ||||||||| ||||| | ||| || Sbjct 6488 CTCATCGTCGTTGAGTCTGTTGTTCCAGTCGTGAAGGTCCTTGGAGAGGTCAATCTCTTC 6547 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | ||||| || || |||||||| || |||||||| Sbjct 6548 TGCAGTCCAGAAGGAGGCCTCGGCCTTCTTGTACAT 6583 >seq1609 Length=13884 Score = 123 bits (136), Expect = 2e-23 Identities = 138/182 (76%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| ||||| || |||||||| ||||||||| |||| |||||| || |||||| | | Sbjct 320 TTCGTCAAAACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCCGACACCATC 379 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACCAACAGCGGCT 38371 | | | || | || |||| ||||| ||||| || ||||||| |||| ||||| | Sbjct 380 GACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGGAT-CCCGCCGGACCAGCAGCGCTT 438 Query 38372 CATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAA 38431 || | ||||||||| ||||| || |||| | | ||| | | ||| || ||||||||||| Sbjct 439 GATCTTCGCGGGCAAGCAGCTCGAGGACGGGAGGACCTTGAGCGATTATAACATCCAAAA 498 Query 38432 GG 38433 || Sbjct 499 GG 500 >seq1307 Length=69414 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 38251 TATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCG 38310 || |||| || || || || ||||| ||||| ||| | || || ||| | | |||| | Sbjct 38430 TAGTCGTCAAGACCCTGACTGGCAAGACCATTACCCTGGAGGTGGAGTCTTCGGACACCA 38489 Query 38311 TGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGC 38370 | | | | || | || || | ||||||||||| || || |||| |||||||| | Sbjct 38490 TCGACAATGTAAAGGCCAAGATTCAGGACAAAGAGGGTATCCCTCCCGATCAACAGCGTC 38549 Query 38371 TCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAA 38430 |||| | ||| ||||| ||||| || |||| || || ||| ||||||||||||||||| Sbjct 38550 TCATCTTCGCCGGCAAGCAGCTCGAAGACGGCCGTACTCTCTCCGACTACAACATCCAAA 38609 Query 38431 AGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| | || || ||| | || || ||| Sbjct 38610 AGGAATCCACTCTTCATCTCGTCCTCCGT 38638 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || || || || || || || |||||||| | || ||||| | | Sbjct 38878 AATGCAGATCTTTGTGAAGACCCTGACCGGAAAGACCATCACACTGGAAGTCGAATCGTC 38937 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | | || | || |||| ||||| ||||| || || | ||||| Sbjct 38938 AGACACGATAGACAATGTCAAGGCGAAGATCCAGGACAAGGAGGGTATCCCACCGGACCA 38997 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| || || | || |||||||||||||| || | ||| || || |||||||| Sbjct 38998 ACAGCGCCTGATCTTTGCAGGCAAACAGCTGGAGGATGGGCGGACACTGTCGGACTACAA 39057 Query 38423 CATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| ||| || || || |||||||||||| || | || || Sbjct 39058 CATCCAGAAGGAGAGC-ACCCTTCACTTGGTGCTGCGTCTGCGTGGAGG 39105 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || ||||| |||||||| |||| || || | | Sbjct 38651 ATGCAAATCTTCGTCAAGACCTTGACAGGCAAGACCATCACTCTCGAAGTAGAATCTTCA 38710 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || | || || | || ||||| || || ||| | |||||| Sbjct 38711 GACACAATCGACAATGTCAAGGCCAAGATACAAGATAAAGAAGGCATCCCCCCGGACCAA 38770 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | ||| |||||||| | || || | ||||| ||| |||||||||| Sbjct 38771 CAGCGCTTGATCTTCGCCGGCAAACAATTAGAAGATGGCCGCACACTCTCCGACTACAAC 38830 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || ||| | || || ||| | || || ||| || | || || Sbjct 38831 ATCCAGAAAGAATCCACCCTACATCTCGTCCTCCGTCTGCGCGGTGG 38877 >seq59 Length=11125 Score = 86.0 bits (94), Expect = 6e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 38329 AAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAAC 38388 ||||| ||||| || ||||| || | ||||| || || || || | ||||||||| | Sbjct 4230 AAATCAAAGACAAGGAAGGAATCCCACCTGACCAGCAACGCCTGATCTTCGCGGGCAAGC 4289 Query 38389 AGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATT 38448 |||| || |||| ||||| ||| |||||||| ||||||||||| | ||||| || Sbjct 4290 AGCTCGAGGACGGTCGCACTCTCTCAGACTACAATATCCAAAAGGAGTCCACGCTCCACC 4349 Query 38449 TGGTGCTGCGTTTGAGAGGCGG 38470 |||| | || ||| | || || Sbjct 4350 TGGTCTTACGCTTGCGCGGAGG 4371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500162440170880