Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq613 98.7 8e-15 >seq613 Length=4587 Score = 98.7 bits (108), Expect = 8e-15 Identities = 311/477 (65%), Gaps = 5/477 (1%) Strand=Plus/Plus Query 517265 ACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTC 517324 ||||| | || ||||||||||| | |||||| ||||| || || || ||||| || | Sbjct 1058 ACATTCATGATTCCATTGGCATCAAGATCAAAGGTGACCTCGATCTGTGGGACTCCACGA 1117 Query 517325 TGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAAT 517384 | || ||||||||||| | | || | ||||| || || || || ||| | Sbjct 1118 GGTGCGGGTGGGATCCCAGAGAGTTCGAACTTGCCCAGCAGGTTGTTGTCCTTGGTGCGT 1177 Query 517385 TTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTA 517444 || ||||||||||||| ||||||| || | | ||| || || || | |||| Sbjct 1178 GCACGCTCACCCTCGAAAACTTGGATAAGTACACCGGGTTGGTTGTCGGAGAAGGTTGAG 1237 Query 517445 AATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATA 517504 || ||| |||||| || || || || ||||| | | || | ||||| | Sbjct 1238 AACACTTCGGATTTCTTGGTGGGGATAGTCGTGTTGCGCTTGATGAGGGCAGTCATGACG 1297 Query 517505 CCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTT 517562 || || |||||||| | |||||| || || || | |||||| | || || || | || Sbjct 1298 CCGCCAGCTGTTTCAATACCAAGGGAGAGTGGGGAGACATCGAGTAAGAGGATCTCGTTG 1357 Query 517563 GAAGTTTTTCATCA-GTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCA 517621 | | ||| | | || | || |||||| || ||||| | |||||||| || || Sbjct 1358 GTGGACTTTGAGGAGGTGTCGCCGGAAAGAATGGCAGCTTGGACGGCAGCACCGTAGGCC 1417 Query 517622 ACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGA 517681 ||||| || || || || | | || || | | ||| || ||||| || | || | Sbjct 1418 ACAGCCTCGTCGGGGTTGATGGATTTGTTCGGCTCTTTGCCGTTGAAGAAGTCGGACACC 1477 Query 517682 AGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCAC 517737 |||| ||| | ||| || ||||| | || || || || | || || || || || Sbjct 1478 AGTT-TCTGGATCTTGGGGATACGGGTGGAGCCACCGACCAGGACGATCTCGTGGAC 1533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780740174201842