Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq613 311 1e-79 seq1599 174 2e-38 seq40 132 6e-26 seq1397 86.0 8e-12 >seq613 Length=4587 Score = 311 bits (344), Expect = 1e-79 Identities = 1058/1646 (64%), Gaps = 84/1646 (5%) Strand=Plus/Plus Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 |||||| ||| | || ||||| || || || | ||| |||||| || |||||||| Sbjct 931 TTCATCCTCAGCCTTGTACTTCTCGGCCTCAGACAGCATGCGTTCAATATCATCTTTCGA 990 Query 6628 TAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTC 6687 | | ||||| || || || || |||||| | | ||||| | | |||| || Sbjct 991 CAGACGGCCCTTGTCGTTGGTGATGACAATCTTGTTCGTCTTACCAGTGCCCTTCTCAAG 1050 Query 6688 AGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGT 6747 ||| ||||||| || ||||| ||||||| ||| || | || | || ||||| Sbjct 1051 AGCGGAGACATTCATGATTCCATTGGCATCAAGATCAAAGGTGACCTCGATCTGTGGGAC 1110 Query 6748 ACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGT 6807 || | ||||||| ||| || || | | || || | || || | |||| ||| | Sbjct 1111 TCCACGAGGTGCGGGTGGGATCCCAGAGAGTTCGAACTTGCCCAGCAGGTTGTTGTCCTT 1170 Query 6808 CGCCTTCTT--ACGTTCACCTTCATAGACTTTAATT-GT-CACCGCAGGTTGATTATCTT 6863 | | | | ||| ||||| || | |||| || || ||||| ||||| || || Sbjct 1171 GG--TGCGTGCACGCTCACCCTCGAAAACTTGGATAAGTACACCG--GGTTGGTTGTCGG 1226 Query 6864 GTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCG 6923 |||||||| | || |||||| | || || ||||| || | | || | | Sbjct 1227 AGAAGGTTGAGAACACTTCGGATTTCTTGGTGGGGATAGTCGTGTTGCGCTTGATGAGGG 1286 Query 6924 GGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTA 6983 ||||| | || || ||||| | ||||| || || || | || || ||||| Sbjct 1287 CAGTCATGACGCCGCCAGCTGTTTCAATACCAAGGGAGAGTGGGGAGACATC---GAGTA 1343 Query 6984 ACAGG-TCT------TGAACA--GATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGA 7034 | ||| ||| || || || | | || || | | ||||| ||||||| Sbjct 1344 AGAGGATCTCGTTGGTGGACTTTGAGGAGGTG---TCGCCGGAAAGAATGGCAGCTTGGA 1400 Query 7035 CCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGT 7094 | | || ||||| || || ||||| |||||||| || | ||| ||| | ||||| |||| Sbjct 1401 CGGCAGCACCGTAGGCCACAGCCTCGTCGGGGTTGATGGATTTGTTCGGCTCTTTGCCGT 1460 Query 7095 TAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAA 7154 | || | || || | || || || || || ||||| || || || |||||||||| | Sbjct 1461 TGAAGAAGTCGGACACCAGTTTCTGGATCTTGGGGATACGGGTGGAGCCACCGACCAGGA 1520 Query 7155 CGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTT 7214 |||| || | || ||||| |||||||| | ||| || | || || || | Sbjct 1521 CGATCTCGTGGACAGWGGATTTGTCGATCTTGGCGTCACGCAAGACACGCTCAACTGGCT 1580 Query 7215 CCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATG 7274 |||| ||||| | ||| || |||||||| ||||| |||||||| ||||| | Sbjct 1581 CCATTGTGGAGCGGAAGAGATCCTGGCAAAGTTCCTCGAAACGGGCACGGGTGATGGAGG 1640 Query 7275 TATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAG 7334 | ||||| || | ||| ||||| | ||| || || || |||| ||| ||||| | || | Sbjct 1641 TGTAGAAGTCGATGCCTTCGTAGAGCGAGTCGATCTCGATGGATGTCTGTGCGGAGGAGG 1700 Query 7335 ATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGC-----GG 7389 | | || ||||| || ||||| || || || || | ||| || || || || || Sbjct 1701 AGAGGGTACGCTTCGCTCGCTCGCAGGCAGTACGGAGACGGCGGAGAGCGCGATTGTTGG 1760 Query 7390 --------------------GTTACC----------------------GGAAATAT--CT 7405 |||| | ||| || | | Sbjct 1761 AACTCAGATCCTATAGAGATGTTAGCAATCGTATCGGGAGAGTGTCATGGACATTTTACC 1820 Query 7406 TTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTG-TCGA--AGGAGTCTCGAATCGAAA 7462 ||||| || || ||||| ||||||| |||||| | || ||| | | || || Sbjct 1821 TTCTTGTGCTTGCGTTTGAACTCTTGGACGAAGTGGTTGACAAGGCGGTTG---TCAAAG 1877 Query 7463 TCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCA 7522 || || ||||||| ||||| || || || || | |||||| || |||||||| |||| Sbjct 1878 TCCTCGCCACCCAGATGTGTGTCACCGGCTGTAGATTTGACCTCGAAGATACCCTCTTCG 1937 Query 7523 ATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTA 7582 || | | || || ||||| || || ||||| |||| ||| || || | ||||| Sbjct 1938 ATTGTGAGCAGAGAGACATCGAATGTGCCACCTCCCAAGTCGAAGATCAACACGTTACGC 1997 Query 7583 TCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATA 7642 ||| | ||| | ||||| ||||||||||| || || || || || || ||||| || || Sbjct 1998 TCGCCCTCTGTCTTCTTGTCGAGACCGTAGGCAATCGCTGCTGCAGTAGGTTCGTTGATG 2057 Query 7643 ATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAA 7702 ||||| || |||||| || |||||| | |||||||| || ||||| || || || Sbjct 2058 ATACGGAGGACGTTCAGACCTGCAATAAGACCGGCATCTTTGGTAGCTTGACGCTGAGAG 2117 Query 7703 TCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGAT 7762 ||||| |||||||| || || || || || |||| ||||| | || || || ||| Sbjct 2118 TCGTTGAAGTAGGCTGGAACTGTCACAACAGCGTTGTTGACTGTGCCTCCAAGGTATGAT 2177 Query 7763 TCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGT 7822 || || | ||| ||| ||||| | | ||| | || |||||||| | | ||||| Sbjct 2178 TCTGCAGTCTCTCGCATCTTGGTCAAGATCATGGCGGAGATCTCTTCTGGTGTGAACTGC 2237 Query 7823 TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACC 7882 || | || || || || || || |||| || || | || | ||| | Sbjct 2238 TTGTTCTCGCCCTTGAACTCGACAGAGATCACTGGCTTGCCAGCCTTTTCCACGAT---C 2294 Query 7883 TTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATA 7942 || ||| | | |||||||| || |||| ||| ||| ||||| || || Sbjct 2295 TTGAACGGAAAGTGCTTCATATCAGACTGAACCTCCGCGTCACCAAAYTTTCTCCCTATC 2354 Query 7943 AGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCG 8002 || | ||| ||||| || || ||||| | ||||||||||| ||||||||| || | | Sbjct 2355 AGTCTCTTCGCATCGAAGACAGTGTTGGTCGGGTTCATGGCGACTTGGTTCTTGGCGGAG 2414 Query 8003 TCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTC 8062 || ||||| || ||||| | || || || |||||| | || || || || || || Sbjct 2415 TCGCCGATGAGGCGTTC---GGTGTCGGTGAAAGCGACGAAGGACGGAGTGGTACGGTTG 2471 Query 8063 CCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATAC 8122 || ||||| || ||||| || || | || || | ||| || ||||| |||||| Sbjct 2472 CCCTGGTCATTTGCAATGATCTCAATACGATCATCCCTGAAGATTCCTACGCAGGAATAC 2531 Query 8123 GTTGTTCCTAAATCAATACCGATTGC 8148 || || || | ||| || || ||||| Sbjct 2532 GTCGTACCAAGATCGATGCCAATTGC 2557 >seq1599 Length=14205 Score = 174 bits (192), Expect = 2e-38 Identities = 351/518 (68%), Gaps = 9/518 (2%) Strand=Plus/Minus Query 7244 AGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAA 7303 || ||||| ||||| || || ||||| | | |||||| |||| ||| | | |||| Sbjct 12726 AGATCCTCGAAACGAGCCCGCGTAATTTGAGCGTTGAAATCCTCGCCCTCGAAAAGCGAA 12667 Query 7304 TCAATTTCAATGGTTGTTTGTG--CCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACG 7361 ||||| || | || || || | |||| |||| ||||||||| || ||||| || | Sbjct 12666 TCAATCTCGACAGTGGTCTGAGTACCGTTC--GATAGCGTTCGCTTMGCTCGCTCGCAGG 12609 Query 7362 CCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTT 7421 || | | || || |||||||| | || || || | ||||||||| ||| | || Sbjct 12608 AAGTCCTCAGCCGCCGCAGGGCACGAGCGTCTCCAGATAGATCTTTCTTGGTTTTTCTTT 12549 Query 7422 TAAACTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGT 7480 || |||| |||||| |||| | || | | ||||||||||| |||||| | || Sbjct 12548 GGAAYTCTTTCTTGAAGTGATCGA-GCAGRTTGGTATCGAAATCTTGACCACCAAGATGA 12490 Query 7481 GTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACA 7540 || ||||| |||||||| ||||| || | || |||| || | | ||| || ||| Sbjct 12489 GTGTCCCCAGCGGTCGCCTTGACGGTGAAAACGCCGCCTTGGATATGGAGCAATGACACA 12430 Query 7541 TCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTC--TTTGTTCT 7598 || || || || ||||| || || | || | || ||| || | || || || Sbjct 12429 TCGAAGGTTCCTCCACCAAGATCGTAGATCAAGACATTCCKCTCCTTCTCGGATTTCCCT 12370 Query 7599 TA-TCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTC 7657 | | ||||| || ||||| || || || ||||| || || || || ||||| | | Sbjct 12369 GACCCCAGACCRTAGGCGATGGCMGCAGCYGTTGGYTCGTTGATGATCCGAAGGACTTGC 12310 Query 7658 AGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCC 7717 ||| | || || | | ||||| || ||||||||||| || ||||| |||||||| Sbjct 12309 AGGTCTGCGATGGCGCCTGCATCCTTGGTCGCTTGTCGCTGGTTGTCGTTGAAGTAGGCG 12250 Query 7718 GGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 ||||| || | ||| || | | |||| ||||| || || Sbjct 12249 GGGACTGTGATGACGGCTTTCTTGACCTTCTTCCCAAG 12212 >seq40 Length=17677 Score = 132 bits (146), Expect = 6e-26 Identities = 336/507 (66%), Gaps = 7/507 (1%) Strand=Plus/Plus Query 105469 TTCTCGTAAAGATCTTCAAACTCTTTACCGTACACGTCTGAAAGACCCTTTGCCTGATCA 105528 ||||| || || | || ||||| | || || | |||| ||||||| |||| | | Sbjct 2263 TTCTCATACAGCGCCTCGAACTCGTCCCCATAAATATCTGCAAGACCCGGAGCCTCGTTA 2322 Query 105529 GGACAAAACAATGACCAATTACCATCGGATTCAACGCGTTTCATGAACAAATCTGGAATC 105588 || || | ||| | ||| | ||||| || ||| || || |||||||| | ||| || ||| Sbjct 2323 GGGCACATCAAAGTCCACTCACCATTGGCTTCGACTCGCTTCATGAAGAGATCCGGGATC 2382 Query 105589 CACATGGCTGAAAAGAGGTCTCGACACCTCGCCTCTTCATCACCTTGATTCAAACGAATT 105648 || | ||| | || || |||||| | | ||||| | || |||||| || | Sbjct 2383 CAAAGGGCAAAGAATAGATCTCGAGCGCGGACTTCTTCCTTGCCGTGATTCTTCCGCAAA 2442 Query 105649 TCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACTGCAATAGACCCTTTA 105708 || || || || | | ||||| |||||||| || | || | || | || || | Sbjct 2443 TCCAGGAATTCAAAGACGTCGGCATGCCATGGCTCGAGGTACATGGCGAAAGCTCCGGGA 2502 Query 105709 CGAC----GCCCCGCTTGATTGACATATCTTGCGGTTGAGTTATACACTCGTAACATTGG 105764 || ||| | |||||| |||||| | ||||| ||| | || |||| ||| || Sbjct 2503 CGCTTGTTGCCTC-CTTGATCGACATAGCGGGCGGTGTTGTTGAAGACGCGTAGCATAGG 2561 Query 105765 AATAATACCATCGGATGTTCCATTTGTTCCACGAATATGTGATTTATTTGCACGTACATC 105824 || ||| |||| ||| | ||||| || || | |||| || | || || | Sbjct 2562 AACAATGCCATTGGAGGAGCCATTGGTGCCCCCGATATACGAGCCTGTAGCGCGAATGCG 2621 Query 105825 GTGAACGTGTAACCCAATACCCCCAGCCCACTTACTGATACGCGCACACTCTTTTACTGT 105884 ||| | || | ||||| || || || ||| ||| | |||||| ||| | || Sbjct 2622 GTGGATGTTCAGGCCAATGCCACCGGCAGTCTTCGAGATGAGAGCACACGTTTTGAGGGT 2681 Query 105885 ATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACACGATGACATTTG 105944 ||||| || |||||||||||||| ||||| | | |||| ||| || || ||||| || Sbjct 2682 GTCGTAGATGCCGTCGATACTATCCTCCTTCATGTCGATCAAGAAGCATGAGGACATCTG 2741 Query 105945 TGGTCTG-GGTGTACCAGCATTGAACA 105970 || ||| || || ||||||||||||| Sbjct 2742 AGG-CTGTGGGGTGCCAGCATTGAACA 2767 >seq1397 Length=46538 Score = 86.0 bits (94), Expect = 8e-12 Identities = 221/331 (67%), Gaps = 16/331 (5%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || ||||| || ||||| | || || || || |||| ||||||||||||| || Sbjct 6079 TCAAAATCCTCGCCACCAAGATGGGTGTCACCATTCGTCGACTTGACTTCAAAGACCCCC 6138 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTA-C 7575 || || | | | || | ||||| || ||||| ||||| || ||| | | | Sbjct 6139 TTTTGGATCTCGAGAATGGAGATGTCAAAGGTCCCACCTCCCAGATCGTAAACGGCAATC 6198 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 ||| ||| || || ||| ||||| |||||||| | ||| ||||| || || || Sbjct 6199 ACTCG-ATCCTCTTC------CTTCTCGAGCCCGTACGCTAAAGCGGCCGCGGTGGGCTC 6251 Query 7636 ATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 ||| | | || || ||| || |||||||| || | || || || || ||||| | Sbjct 6252 ATTCACCACCCGCAAAACA-TTGAGGCCAGCGATCTGACCTGCGTCCTTGGTAGCTTGAC 6310 Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGA---CTTTCTTAC 7751 | ||||| ||||| |||||||| || || || ||||| ||| | ||| | || ||| Sbjct 6311 GCTGCGAGTCGTTGAAGTAGGCGGGTACTGTGACGACACCGTTCTTGATGCCCTTGTTA- 6369 Query 7752 CGAGATACGATTCCGCGATATCTTTCATTTT 7782 || || ||||| || | || ||||| || Sbjct 6370 --AGGTAGGATTCGGCAGTCTCCTTCATYTT 6398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635119644811880