Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq40 145 9e-30 seq1499 96.9 4e-15 seq1625 84.2 3e-11 >seq40 Length=17677 Score = 145 bits (160), Expect = 9e-30 Identities = 388/586 (66%), Gaps = 19/586 (3%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 |||||| ||||| | ||||| ||||| | ||||| || | || | || || || Sbjct 2882 CCACAGCACATGATTATGCGTGTCGCTGTGGGTATACACGACGACAACATCGACAAGGTC 2823 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATG-TTCATCCACGCAACACCAACCCTCTT 111730 | ||||| ||| | ||||| | | || |||| |||||| | || ||| | || Sbjct 2822 ATCGAGACCTACCATCTCATGTCTCA-GAAATACTTCACCCACGCGTCCCCTACCTTGTT 2764 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 ||| ||||| || ||| || || |||||| || ||| | || | | |||||||| Sbjct 2763 CAATGCTGGCACCCCACAGCCTCAGATGTCCTCATGCTTCTTGATCGACATGAAGGAGGA 2704 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 | ||| | ||||| |||| ||| |||| ||||| | ||||| ||| || || Sbjct 2703 TAGTATCGACGGCATCTACGACACCCTCAAAACGTGTGCTCTCATCTCGAAGACTGCCGG 2644 Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTA--GAGGTACA 111908 ||| || || || ||||||| | | || | || ||||||| | || || Sbjct 2643 TGGCATTGGCCTGAACATCCACCGCATTCGCGCTAC--AGGCTCGTATATCGGGGGCACC 2586 Query 111909 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 111968 ||||| || |||| ||| |||| ||||| ||||| || ||| ||| || |||||| Sbjct 2585 AATGGCTCCTCCAATGGCATTGTTCCTATGCTACGCGTCTTCAACAACACCGCCCGCTAT 2526 Query 111969 GTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGG 112022 || | |||| || ||||| | ||| || |||| | || || ||||||||| Sbjct 2525 GTCGATCAAGGAGGCAACAAGCGTCCC---GGAGCTTTCGCCATGTACCTCGAGCCATGG 2469 Query 112023 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG--CGC 112080 || || || || | || ||||| || ||||| || || || | || || | ||| Sbjct 2468 CATGCCGACGTCTTTGAATTCCTGGATTTGCGGAAGAATCACGGCAAGGAAGAAGTCCGC 2409 Query 112081 GGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 112140 | | || ||||| |||| || || ||||| || ||||||||||||||| |||| || | Sbjct 2408 GCT--CGAGATCTATTCTTTGCCCTTTGGATCCCGGATCTCTTCATGAAGCGAGTCGAAG 2351 Query 112141 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCT 112186 | ||| | ||| || | | || || || |||| || ||||| Sbjct 2350 CCAATGGTGAGTGGACTTTGATGTGCCCTAACGAGGCTCCGGGTCT 2305 >seq1499 Length=34637 Score = 96.9 bits (106), Expect = 4e-15 Identities = 159/224 (71%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 102110 AGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGC 102168 |||||| ||||| | ||||| || || |||||| || ||| | | |||| | | Sbjct 6205 AGTTCCTTGTATCCGCAAGAAGGCCGACTGGGCTCTGCGATGGATAGCCGACAAGAACTC 6146 Query 102169 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 102228 | ||||| | ||||| |||| ||||| || ||||| |||||||||||||| | Sbjct 6145 AA-CTTTTGCCCAACGACTTGTCGCTTTTGCTGCAGTCGAGGGCATCTTCTTCTCTGGCT 6087 Query 102229 CCTTCTGC-GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCC 102287 | || ||| | | | ||||| |||||||| ||||| ||||| ||||| ||| ||| Sbjct 6086 CATT-TGCATCGGTCTTCTGGCTGAAGAAGCGTGGTCTGATGCCCGGTCTGACCTTTTCC 6028 Query 102288 AACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||||| || ||||| || || |||||| | ||| || ||||| Sbjct 6027 AACGAACTCATCTCGCGGGATGAGGGAATGCACACTGACTTTGC 5984 >seq1625 Length=168088 Score = 84.2 bits (92), Expect = 3e-11 Identities = 270/411 (66%), Gaps = 11/411 (3%) Strand=Plus/Plus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 ||||| || || ||||| || || || || | || || | || | ||||| || | Sbjct 111142 CGATCGAAACGGCCTGGACGCAGAAGTGCCTTGTCGAGAACGTCTGCCCGATTGGTACCA 111201 Query 15945 GCGATGACAACAATACCTGTTTCGT--TATCAAAACCATCCATCTCTGTCAAAAGCTGGT 16002 || | ||| || | | || | || ||| |||||||||||||| ||||| | ||||| Sbjct 111202 GCTAGGACGACGA--CTTGCTCCGAGGTATTGAAACCATCCATCTCCGTCAAGATCTGGT 111259 Query 16003 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCG---TTG-CTTT 16058 | | ||| ||| || || || || || | ||| || || || ||| ||| Sbjct 111260 TGAGAGTACCTTCTCGCTCGTCGTTGCCTCCGAAGCCAGT-GCTCTTCGACCTTGTCTTG 111318 Query 16059 CCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCA 16118 || || || || || || |||||||||| |||||||| | | |||||| | Sbjct 111319 CCAACAGCGTCGATTTCGTCAATGAAGATAATGCATGGCGCGCTCTTGCGAGCTGTCTGG 111378 Query 16119 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 16178 || ||||| || ||||| || || ||||| || || ||||| || || | | || Sbjct 111379 AACAGATCTCGGACACGTGAAGCACCAACACCGACGAAGATCTCAACGAACTCCGAACCG 111438 Query 16179 G-AACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 16237 || | || | ||| || || |||||| || ||| | || ||| || | ||||| Sbjct 111439 CTAATACTGAA-GAAAGGAACGCCAGATTCGCCGGCAGTCGCCTTGGCCAGCATTGTCTT 111497 Query 16238 ACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288 ||| ||||| || ||| | || | || ||||| ||||||||||| || Sbjct 111498 ACCTGTACCAGGTGGACCTGAAAGCAATGCTCCTCGAGGAATCTTGGCACC 111548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620729542873040