Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq40 109 6e-19 seq1625 96.9 4e-15 seq290 82.4 9e-11 >seq40 Length=17677 Score = 109 bits (120), Expect = 6e-19 Identities = 288/440 (65%), Gaps = 0/440 (0%) Strand=Plus/Plus Query 109399 GCCTTCGAGCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGC 109458 ||| | | ||| ||||| ||||| |||||||| | || |||||| || | |||| Sbjct 1097 GCCATTGTGCGCAGATAGTACATGCCCGTTTTCAAGCCCATCTTCCAGCCGGCGAAATGC 1156 Query 109459 ATTGAAGAGAGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGA 109518 || || | | || | ||| || || ||| | ||||| ||||| || ||| Sbjct 1157 ATCGATGTTATCTTACCCATTGTGGGGTCCTTCATGTGAATGTTCAAGGACTGGGATTGA 1216 Query 109519 TCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAG 109578 ||||| || ||| || || || ||||| | | || ||||| || |||||| Sbjct 1217 TCGATAAAGGCACCGCGGTCGGCGGCCATTTGCACAATCTGGCGCTGGCTGATCTCCCAG 1276 Query 109579 ACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCA 109638 || |||||||| | |||||| ||| |||| |||| |||||| || || || || Sbjct 1277 ACCGTCTTGTAGAGCGACTTGATGTCAGCGGGGATGTTGGGGATGTTCTGGATGGATCCG 1336 Query 109639 CCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCG 109698 || | | ||| | | |||||| | | ||||||||| || | | |||||| Sbjct 1337 CCGTCGGCGATGATGCGGTTCTTCATGTTGTCCGACCAGAGGCCCATATCGACGAGATCC 1396 Query 109699 TCAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATG 109758 | | || ||||| || |||||| || || || || ||| || || Sbjct 1397 TTGAGCAGCCAAGGATTGACGACCTGAAATTCGCCCGCTAGCACACGACGGGAATATATA 1456 Query 109759 TTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTG 109818 || | ||||| |||||||| || ||||||||||| ||||| || | || || || ||| Sbjct 1457 TTCGAGGTGTAAGGTTCGAAGCATTCATTGTTGCCGAGGATCTGGGATGTCGAGGCCGTG 1516 Query 109819 GGCATGGGAGCCATGAGAAG 109838 |||||||| |||| ||| || Sbjct 1517 GGCATGGGGGCCACGAGGAG 1536 Score = 100 bits (110), Expect = 3e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 110281 GGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAA 110340 ||||| |||| || || |||||||| || | | ||| || |||||||||| | | Sbjct 1973 GGGAGGGCAAGGGAAGCCAGATTGCAGACTGCAACCTCATCAGGCGCGGTGTATTCGATA 2032 Query 110341 ATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAG 110400 || ||||| ||||||||||| || ||| ||||| ||||||||| || ||| | Sbjct 2033 ATCTCCGTGCACAAGTTGGAGCTACGGATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGG 2092 Query 110401 TTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATG 110460 ||| |||||||| || |||||| | ||| | ||||| || ||||| | || || ||| Sbjct 2093 TTGGCGGCATCCTTGTATAGCATGAACGGGTTGCCAGTCTCGGTCTGAGCCTCTAGGATG 2152 Query 110461 GCCTTCCATA 110470 | | ||||| Sbjct 2153 GAGTACCATA 2162 Score = 87.8 bits (96), Expect = 2e-12 Identities = 179/266 (67%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 110776 ACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCA 110835 |||||||| || ||| |||||||| | |||||||||| ||| |||| ||| ||| Sbjct 2524 ACATAGCGGGCGGTGTTGTTGAAGACGCGTAGCATAGGAACAATGCCATTGGAGGAGCCA 2583 Query 110836 TTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCA 110895 || || |||| || || | || |||||| |||||| | || ||||| ||| Sbjct 2584 TTGGTGCCCCCGATATACGAGCCTGTAGCGCGAATGCGGTGGATGTTCAGGCCAATGCCA 2643 Query 110896 CCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAA 110955 || || ||| || | |||||| | |||| || | || || || || || | Sbjct 2644 CCGGCAGTCTTCGAGATGAGAGCACACGTTTTGAGGGTGTCGTAGATGCCGTCGATACTA 2703 Query 110956 TCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTG 111015 || |||| || | || | ||||| || ||||||||||| | || || || |||||| Sbjct 2704 TCCTCCTTCATGTCGATCAAGAAGCATGAGGACATCTGAGGCTGTGGGGTGCCAGCATTG 2763 Query 111016 AAGAGTGTAGGTGTCGCATGAATGAA 111041 || | ||||| | ||| || |||| Sbjct 2764 AACAAGGTAGGGGACGCGTGGGTGAA 2789 >seq1625 Length=168088 Score = 96.9 bits (106), Expect = 4e-15 Identities = 278/418 (67%), Gaps = 25/418 (6%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 ||||||||||| ||||| || || || || | || |||| || | || || ||| | Sbjct 111142 CGATCGAAACGGCCTGGACGCAGAAGTGCCTTGTCGAGAACGTCTGCCCGATTGGTACCA 111201 Query 11563 GCAATGACTACAA--TGCCAGTCTCAT-TGTCGAAACCGTCCATTTCTGTGAGAAGCTGG 11619 || | ||| || | ||| || | | | |||||| ||||| || || | | |||| Sbjct 111202 GCTAGGACGACGACTTGC---TCCGAGGTATTGAAACCATCCATCTCCGTCAAGATCTGG 111258 Query 11620 TTGATCGTCTGTTCACGCTCATCGTTG-----GAGGGCATACCACCTGCCGAACGCTTCT 11674 |||| || ||| ||||| |||||| || | || | | | ||| | ||| Sbjct 111259 TTGAGAGTACCTTCTCGCTCGTCGTTGCCTCCGAAGCCAGTGCTCTT--CGACCTTGTCT 111316 Query 11675 TACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGC---CT 11731 | || |||||||| || || || ||||| | || || ||| || | ||| || Sbjct 111317 TGCCAACAGCGTCGATTTCGTCAATGAAGATAATGCA----TGGCGCGCTCTTGCGAGCT 111372 Query 11732 GT-TCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTT 11790 || | ||| || || || ||||| || |||||||| ||||| ||||||||||| | Sbjct 111373 GTCTGGAACAGATCTCGGACACGTGAAGCACCAACACCGACGAAGATCTCAACGAACTCC 111432 Query 11791 G--CGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGA 11848 | | || || |||||| ||| ||||| ||| || || || | || || || | Sbjct 111433 GAACCGCT-AATACTGAA-GAAAGGAACGCCAGATTCGCCGGCAGTCGCCTTGGCCAGCA 111490 Query 11849 GAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906 |||||||| |||||||||| ||| | || | || || || || ||||||||||| Sbjct 111491 TTGTCTTACCTGTACCAGGTGGACCTGAAAGCAATGCTCCTCGAGGAATCTTGGCACC 111548 >seq290 Length=84329 Score = 82.4 bits (90), Expect = 9e-11 Identities = 171/253 (68%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 11719 TTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATC 11778 ||||| || || | || || || || || || ||||| || |||||||| || |||| Sbjct 18204 TTGGCGCGGGCGTTTTGAAAGAGCTCTCGCACGCGCTTGGCCCCAACACCGACATACATT 18145 Query 11779 TCAACGAAGTTTGCGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCT 11838 || | || | | | | || | | |||||| || || ||||||||| | ||| Sbjct 18144 TCGTCAAACTCCGAGCCGGACATGTAGAAGAAGGGCACGCCAGCCTCACCAGCAACGGCG 18085 Query 11839 CGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATC 11898 || || || || ||||| || ||||| || | ||| | | |||| || ||| | | Sbjct 18084 CGTGCCAGCAGCGTCTTGCCTGTACCTGGAGGGCCAACCATAAGGATACCCTTGGGAAGC 18025 Query 11899 TTGGCACCACTTCCAA--AGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAA 11956 || |||| | | | || | | ||| || ||||||||||| || |||| ||| | || Sbjct 18024 TTCCCACC--TAGCGATGAGAATCTCTCCGGGTTCTTGAGGAACTCGACAAGCTCTTGAA 17967 Query 11957 GTTCCTCCTTGGC 11969 ||||||| ||||| Sbjct 17966 GTTCCTCTTTGGC 17954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588963800834600