Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq40 161 1e-34 >seq40 Length=17677 Score = 161 bits (178), Expect = 1e-34 Identities = 386/577 (67%), Gaps = 15/577 (3%) Strand=Plus/Plus Query 106736 AGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTC 106795 ||||| || |||| || || || | | || ||| | |||| | || || |||||| Sbjct 2305 AGACCCGGAGCCTCGTTAGGGCACATCAAAGTCCACTCACCATTGGCTTCGACTCGCTTC 2364 Query 106796 ATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCA 106855 ||||| || || || ||||| |||| | || ||||||| | || | ||||| | Sbjct 2365 ATGAAGAGATCCGGGATCCAAAGGGCAAAGAATAGATCTCGAGCGCGGACTTCTTCCTTG 2424 Query 106856 CCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAG 106915 || || || || || || ||||| || | || || || ||||||||||| || || Sbjct 2425 CCGTGATTCTTCCGCAAATCCAGGAATTCAAAGACGTCGGCATGCCATGGCTCGAGGTAC 2484 Query 106916 ACTGCGATAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCG 106969 | |||| || ||| ||||| || |||||| |||||||| || ||| | Sbjct 2485 ATGGCGAAAGCTCCGG---GACGCTTGTTGCCTCCTTGATCGACATAGCGGGCGGTGTTG 2541 Query 106970 TTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGT-CCCCCGA-ATAC 107027 || || ||||| ||||| |||| ||| |||| || ||||| || ||||||| |||| Sbjct 2542 TTGAAGACGCGTAGCATAGGAACAATGCCATTGGAGGAGCCATTGGTGCCCCCGATATAC 2601 Query 107028 GAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGA 107087 ||| | | || | | ||||||| || ||||| || || || ||| |||| Sbjct 2602 GAGCCTG--TAGCGCGAATGCGGTGGATGTTCAGGCCAATGCCACCGGCAGTCTTCGAGA 2659 Query 107088 TTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGA 107147 | | |||||| | || || | ||||| |||| ||| |||||||| || ||| Sbjct 2660 TGAGAGCACACGTTTTGAGGGTGTCGTAGATGCCGTCGATACTATCCTCCTTCATGTCGA 2719 Query 107148 TAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTG 107207 | | |||||| ||||||||| || ||| || ||||||||||| | ||| || | | Sbjct 2720 TCAAGAAGCATGAGGACATCTGAGGCTGTGGGGTGCCAGCATTGAACAAGGTAGGGGACG 2779 Query 107208 CGTGAATGAA-CATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCT 107266 |||| |||| || | || ||||| | ||| ||||| | ||| || |||| Sbjct 2780 CGTGGGTGAAGTATTTC-TGAGACATGAGATGGTAGGTCTCGATGACCTTGTCGATGTTG 2838 Query 107267 TCCCCGTGGATGCCGATGGCCACACGCATAAACATGT 107303 || |||| || || | || |||||||||| ||||| Sbjct 2839 TCGTCGTGTATACCCACAGCGACACGCATAATCATGT 2875 Score = 89.7 bits (98), Expect = 6e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 106455 TTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTA 106514 |||| ||||| | || |||| |||||| || || |||||| | ||||| || | Sbjct 1971 TTGGGAGGGCAAGGGAAGCCAGATTGCAGACTGCAACCTCATCAGGCGCGGTGTATTCGA 2030 Query 106515 AAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTT 106574 ||| || || ||||||||||| || || || |||| ||||| ||||| ||||| Sbjct 2031 TAATCTCCGTGCACAAGTTGGAGCTACGGATGGTACCCAGGTTCTTCTGGTTGCTCTTGC 2090 Query 106575 TGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 106623 |||| ||||||||||| |||||| | || | || ||||| ||||| Sbjct 2091 GGTTGGCGGCATCCTTGTATAGCATGAACGGGTTGCCAGTCTCGGTCTG 2139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589968580022680