Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq1551 98.7 1e-15 >seq1551 Length=25131 Score = 98.7 bits (108), Expect = 1e-15 Identities = 182/263 (69%), Gaps = 3/263 (1%) Strand=Plus/Plus Query 153789 GGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATA 153848 || || || || || ||||| |||||||| || |||||| || ||| | |||||| Sbjct 12322 GGCTACGGTGGACCACATGCAGCATTCTTCGCTTGTGGAGACAAATACAAGCGCAAGATA 12381 Query 153849 CCTGGCAGAATTGTAGGTCAGTCAGTAGATAGTGAAGGTAATAAAGC-ATACAGATTAGC 153907 || ||| | | | ||| ||| ||| | || || || || || | | || || Sbjct 12382 CCAGGCCGCTTGATTGGTGTGTCCAAGGATCGGCTGGGGAACAAGGCCATGCGG-TTGGC 12440 Query 153908 ACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGC 153967 | ||||| || ||||||||||| | ||||| || || ||||| || || ||||| || Sbjct 12441 CTTGCAGACGAGGGAGCAGCATATTCGCAGAGAGAAGGCCACCAGCAATATTTGCACCGC 12500 Query 153968 TCAGGCACTGCTGGCTAATATGTCTGGATTCTATGCAGCATATCATGGTGCAGATGGACT 154027 |||||| ||||||| ||||| | | |||||||||| || ||||| | | || || Sbjct 12501 TCAGGCCTTGCTGGCGAATATCACCGCTTTCTATGCAGTCTACCATGGGCCTCAGGGCCT 12560 Query 154028 ACATGCTATAG-CAAGAAGAATT 154049 || || || | | ||||||||| Sbjct 12561 ACGCGCAATTGCCCAGAAGAATT 12583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579200803054880