Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq1551 98.7 1e-15 >seq1551 Length=25131 Score = 98.7 bits (108), Expect = 1e-15 Identities = 228/338 (67%), Gaps = 7/338 (2%) Strand=Plus/Plus Query 158391 ATTGATGCAACCTGTAGGTGAGTGGGGATTTGACATTGCTGTAGGTAGTATGCAAAGG-- 158448 |||| || |||| ||| |||| || ||||| ||| | || | ||||| || Sbjct 12249 ATTGTTGAAACCACCAGGCGAGTTTGGTGCAGACATCGCTTTTGGCA--ATGCACAGCGA 12306 Query 158449 TTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACAGACAAG 158508 || ||| | ||| || ||||| || || ||||| |||||||| || |||||| Sbjct 12307 TTGGGTGTCCCTTATGGCTACGGTGGACCACATGCAGCATTCTTCGCTTGTGGAGACAAA 12366 Query 158509 TATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGCGAAGGTAATAAA 158568 || ||| | |||||||| ||| | | | ||| ||| ||| | || || || Sbjct 12367 TACAAGCGCAAGATACCAGGCCGCTTGATTGGTGTGTCCAAGGATCGGCTGGGGAACAAG 12426 Query 158569 GC-ATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCAACCAG 158627 || || | | || || | ||||| || ||||||||||| | ||||| || || ||||| Sbjct 12427 GCCATGCGG-TTGGCCTTGCAGACGAGGGAGCAGCATATTCGCAGAGAGAAGGCCACCAG 12485 Query 158628 TAACATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTGGGTTCTATGCAGCATATCA 158687 || || ||||| || || || ||||||| ||||| | | |||||||||| || || Sbjct 12486 CAATATTTGCACCGCTCAGGCCTTGCTGGCGAATATCACCGCTTTCTATGCAGTCTACCA 12545 Query 158688 TGGTGCAGATGGACTACATGCTATAG-CAAGAAGAATT 158724 ||| | | || |||| || || | | ||||||||| Sbjct 12546 TGGGCCTCAGGGCCTACGCGCAATTGCCCAGAAGAATT 12583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588039019989520