Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1307 156 9e-33 seq59 107 4e-18 seq1609 105 1e-17 seq1188 102 2e-16 >seq1307 Length=69414 Score = 156 bits (172), Expect = 9e-33 Identities = 154/199 (77%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || ||||||||||| || ||||| || ||||| |||| ||||| | || |||||| Sbjct 38631 ACGAGATGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCTTCG 38572 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || ||||| || ||||| || || |||||||| ||| Sbjct 38571 AGCTGCTTGCCGGCGAAGATGAGACGCTGTTGATCGGGAGGGATACCCTCTTTGTCCTGA 38512 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || || || |||||||||||| ||||| || ||||||| ||||| Sbjct 38511 ATCTTGGCCTTTACATTGTCGATGGTGTCCGAAGACTCCACCTCCAGGGTAATGGTCTTG 38452 Query 195112 CCTGTCAAAGTTTTTACGA 195130 || |||| || || |||| Sbjct 38451 CCAGTCAGGGTCTTGACGA 38433 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || ||||| ||||| || || ||||| |||| || || | |||||||| Sbjct 38859 ACGAGATGTAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGTGTGCGGCCATCTTCT 38800 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | || || || |||||||| | || |||||||| || || ||||||||||| ||||| Sbjct 38799 AATTGTTTGCCGGCGAAGATCAAGCGCTGTTGGTCCGGGGGGATGCCTTCTTTATCTTGT 38740 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || || || ||||| ||| ||| ||||| || || | ||||| Sbjct 38739 ATCTTGGCCTTGACATTGTCGATTGTGTCTGAAGATTCTACTTCGAGAGTGATGGTCTTG 38680 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||||||| || || ||||| | |||||| Sbjct 38679 CCTGTCAAGGTCTTGACGAAGATTTGCAT 38651 Score = 125 bits (138), Expect = 2e-23 Identities = 138/181 (76%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCG-GCAAGAGTTCTCCCATCTTCGAGCT 194995 ||||||||||||||| || ||||||||||| ||| |||| || | || || || |||| Sbjct 38346 GTGAAGAGTGGACTCCTTCTGAATATTGTAGTCGCTCAAG-GTGCGACCGTCCTCAAGCT 38288 Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 |||| || || ||||| || || ||||| || || ||||| ||||| ||||| || || | Sbjct 38287 GCTTTCCAGCAAAGATGAGACGCTGTTGATCCGGGGGAATTCCTTCCTTGTCCTGGATCT 38228 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115 | ||||||||| || || ||||| || ||||| |||||||| | ||||| || | Sbjct 38227 TGGCCTTGACGTTATCGATCGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCAG 38168 Query 195116 T 195116 | Sbjct 38167 T 38167 >seq59 Length=11125 Score = 107 bits (118), Expect = 4e-18 Identities = 100/127 (79%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 || || ||||| || |||||||| ||||| |||||||| || | ||||| | || || Sbjct 4356 AAGACCAGGTGGAGCGTGGACTCCTTTTGGATATTGTAGTCTGAGAGAGTGCGACCGTCC 4297 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 ||||||||||| || |||||||| || ||||| ||||| || || || ||||| |||||| Sbjct 4296 TCGAGCTGCTTGCCCGCGAAGATCAGGCGTTGCTGGTCAGGTGGGATTCCTTCCTTGTCT 4237 Query 195049 TGAATTT 195055 | |||| Sbjct 4236 TTGATTT 4230 >seq1609 Length=13884 Score = 105 bits (116), Expect = 1e-17 Identities = 133/180 (74%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 194953 TTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGAT 195011 ||||| || || |||||| |||| || ||||| || ||||||||||| || |||||||| Sbjct 498 TTTTGGATGTTATAATCGCTCAAG-GTCCTCCCGTCCTCGAGCTGCTTGCCCGCGAAGAT 440 Query 195012 AAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTC 195071 | || || ||||| || || || || || ||||| || || || |||||| || || Sbjct 439 CAAGCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTC 380 Query 195072 AATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 |||||||| || || || || ||||| | ||||| || |||| ||||| ||||| Sbjct 379 GATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTTTTGACGAA 320 >seq1188 Length=31586 Score = 102 bits (112), Expect = 2e-16 Identities = 132/180 (73%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 194953 TTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGAT 195011 || || || || |||||| |||| || ||||| || ||||||||||| || |||||||| Sbjct 1359 TTCTGGATGTTATAATCGCTCAAG-GTCCTCCCGTCCTCGAGCTGCTTGCCCGCGAAGAT 1417 Query 195012 AAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTC 195071 | || || ||||| || || || || || ||||| || || || |||||| || || Sbjct 1418 CAAGCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTC 1477 Query 195072 AATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 |||||||| || ||| || || || || | ||||| || |||| ||||| ||||| Sbjct 1478 GATGGTGTCGGAGGATTCGACCTCGAGAGTGATGGTCTTGCCCGTCAGGGTTTTGACGAA 1537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109458045358919