Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq40 111 2e-19 >seq40 Length=17677 Score = 111 bits (122), Expect = 2e-19 Identities = 290/441 (66%), Gaps = 6/441 (1%) Strand=Plus/Plus Query 48125 CTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGA 48184 ||| || || |||||||| | || | | || ||| || ||||| |||||||| | Sbjct 2277 CTCGAACTCGTCCCCATAAATATCTGCAAGACCCGGAGCCTCGTTAGGGCACATCAAAGT 2336 Query 48185 CCAATCCTCATCATT---TTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTAT 48241 ||| |||| |||| || |||| |||| || | ||| || |||||||| || | Sbjct 2337 CCA---CTCACCATTGGCTTCGACTCGCTTCATGAAGAGATCCGGGATCCAAAGGGCAAA 2393 Query 48242 AAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTC 48301 |||| ||| | || | | |||||| ||||| |||| | | || || || || Sbjct 2394 GAATAGATCTCGAGCGCGGACTTCTTCCTTGCCGTGATTCTTCCGCAAATCCAGGAATTC 2453 Query 48302 CATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACC 48361 | | || ||||||||||| || | || || || | | || || || || || || Sbjct 2454 AAAGACGTCGGCATGCCATGGCTCGAGGTACATGGCGAAAGCTCCGGGACGCTTGTTGCC 2513 Query 48362 TCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATT 48421 ||||||||| | ||| | ||| || ||||| | || | || ||| || ||||| ||||| Sbjct 2514 TCCTTGATCGACATAGCGGGCGGTGTTGTTGAAGACGCGTAGCATAGGAACAATGCCATT 2573 Query 48422 TGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAAT 48481 || |||||||| ||| ||||| || |||| | || || | Sbjct 2574 GGAGGAGCCATTGGTGCCCCCGATATACGAGCCTGTAGCGCGAATGCGGTGGATGTTCAG 2633 Query 48482 ACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCC 48541 || || ||||| || | || || || ||||||||| ||| ||||| || || || || Sbjct 2634 GCCAATGCCACCGGCAGTCTTCGAGATGAGAGCACACGTTTTGAGGGTGTCGTAGATGCC 2693 Query 48542 TTCTATACTATCATCTATCAT 48562 || |||||||| || |||| Sbjct 2694 GTCGATACTATCCTCCTTCAT 2714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562097157321480