Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq613 100 2e-15 >seq613 Length=4587 Score = 100 bits (110), Expect = 2e-15 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 || || ||||| || || || ||||| || ||||||||||| |||||||| || | |||| Sbjct 2140 ACAGTTCCAGCCTACTTCAACGACTCTCAGCGTCAAGCTACCAAAGATGCCGGTCTTATT 2081 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 || || || || || || ||||| ||||| ||||||||||| || || |||| || || Sbjct 2080 GCAGGTCTGAACGTCCTCCGTATCATCAACGAACCTACTGCAGCAGCGATTGCCTACGGT 2021 Query 550529 CTTGATAA 550536 || || || Sbjct 2020 CTCGACAA 2013 Score = 89.7 bits (98), Expect = 4e-12 Identities = 341/532 (64%), Gaps = 7/532 (1%) Strand=Plus/Minus Query 552057 ACAATTGAACCAGTAGAACAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACAT 552116 ||||| || ||||| || | || || | || | ||||| || |||||| || || Sbjct 1587 ACAATGGAGCCAGTTGAGCGTGTCTTGCGTGACGCCAAGATCGACAAATCCWCTGTCCAC 1528 Query 552117 GAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCT 552176 || || || || || ||||| || || | || || || || | || || | || | Sbjct 1527 GAGATCGTCCTGGTCGGTGGCTCCACCCGTATCCCCAAGATCCAGAAACTGGT--GTCCG 1470 Query 552177 TATT--TCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATG 552234 || |||| || ||| | || || | || || || |||||||| ||||| | Sbjct 1469 ACTTCTTCAACGGCAAAGAGCCGAACAAATCCATCAACCCCGACGAGGCTGTGGCCTACG 1410 Query 552235 GTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAAC-TGATGAAAAACTACAAA--ATA 552291 |||| || | ||||| || |||||||| || | || | | ||| | || || | | Sbjct 1409 GTGCTGCCGTCCAAGCTGCCATTCTTTCCGGCGACACCTCCTCAAAGTCCACCAACGAGA 1350 Query 552292 TTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGA 552351 | | | | ||||| | || || || |||||| | ||||||| ||| || | |||| Sbjct 1349 TCCTCTTACTCGATGTCTCCCCACTCTCCCTTGGTATTGAAACAGCTGGCGGCGTCATGA 1290 Query 552352 CTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGT 552411 || || ||| | | || || ||||| || || ||||| || || || || | Sbjct 1289 CTGCCCTCATCAAGCGCAACACGACTATCCCCACCAAGAAATCCGAAGTGTTCTCAACCT 1230 Query 552412 ATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTA 552471 || || || ||| | | ||| || ||| |||| || || || | | ||| | Sbjct 1229 TCTCCGACAACCAACCCGGTGTACTTATCCAAGTTTTCGAGGGTGAGCGTGCACGCACCA 1170 Query 552472 AAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAG 552531 | || || || | || || | || | | || || || || || |||||||||| Sbjct 1169 AGGACAACAACCTGCTGGGCAAGTTCGAACTCTCTGGGATCCCACCCGCACCTCGTGGAG 1110 Query 552532 TACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGT 552583 | || || || || || || || ||| | |||||||||||||| ||||||| Sbjct 1109 TCCCACAGATCGAGGTCACCTTTGATCTTGATGCCAATGGAATCATGAATGT 1058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029208370366930