Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq1307 136 3e-27 >seq1307 Length=69414 Score = 136 bits (150), Expect = 3e-27 Identities = 153/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| ||||| |||||||| || || ||||| |||| || || | | |||| || ||||| Sbjct 38854 ATGTAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGTGTGCGGCCATCTTCTAATTG 38795 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || || || || ||||| |||||||| || || || ||||||||||||||||| || || Sbjct 38794 TTTGCCGGCGAAGATCAAGCGCTGTTGGTCCGGGGGGATGCCTTCTTTATCTTGTATCTT 38735 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| | || | ||||| || | ||| ||||| ||||||| || ||||| || Sbjct 38734 GGCCTTGACATTGTCGATTGTGTCTGAAGATTCTACTTCGAGAGTGATGGTCTTGCCTGT 38675 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 || || || || || || |||||| Sbjct 38674 CAAGGTCTTGACGAAGATTTGCATG 38650 Score = 100 bits (110), Expect = 2e-16 Identities = 130/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 |||||| || ||||| ||||| || ||||| |||| || ||| | | | || || | || Sbjct 38626 ATGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCTTCGAGCTG 38567 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || || || || | ||||||||||||||| || || || ||||| || ||||| || Sbjct 38566 CTTGCCGGCGAAGATGAGACGCTGTTGATCGGGAGGGATACCCTCTTTGTCCTGAATCTT 38507 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 |||||| | || | ||||| || | ||||| || || || | || ||||| || Sbjct 38506 GGCCTTTACATTGTCGATGGTGTCCGAAGACTCCACCTCCAGGGTAATGGTCTTGCCAGT 38447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396270397281549