Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1499 118 2e-21 seq40 113 8e-20 >seq1499 Length=34637 Score = 118 bits (130), Expect = 2e-21 Identities = 337/507 (66%), Gaps = 17/507 (3%) Strand=Plus/Plus Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899 || || || || || | ||||||||||| || ||||| ||| ||| |||||| |||| Sbjct 5693 TGATAATCACCAACGCGTTTCTCAAAGAAATTGGTCTTGCCCGCCAGAGAGATGGACTCC 5752 Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGG-CCCATCTGTTCCAGCAG 47958 |||||| || || || | | || || | | | | | |||| |||||| Sbjct 5753 ATGAAGTCAAACGGATTCGTCGCTTTGTA-ATACTTTTGATTACCCAAGGCGAGCAGCAG 5811 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 | || || ||| | |||||||||| ||||||| | ||||||||| | || Sbjct 5812 TCGGTCGGCCACGAATTCGATGTATTGCTTCATGAGGTTTGCGTTCATGCCCAATAGAC- 5870 Query 48019 CAC-GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTAT-CTGCACGGCTTCCCCCACAATC 48076 ||| ||| ||||||| || | ||| |||| ||| || ||| || ||||| | | Sbjct 5871 CACAGGGTAAAGCCTCCGTCAAAAATTCCTGCTCGATGCTG-ACAGCTTCGGTGATGACG 5929 Query 48077 TGCTTAACGCG----GGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCA 48132 | || ||| ||||| | ||| || ||||| || | | || | || Sbjct 5930 TCCTGCACGGCCTGCGGACTGGGGCGGTGCTTT----AGGTG--TGAGA-ACAGGAGACA 5982 Query 48133 GGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACC 48192 |||||||| |||||| || || ||||| |||||| ||||||| ||| ||||| Sbjct 5983 AGCAAAGTCAGTGTGCATTCCCTCATCCCGCGAGATGAGTTCGTTGGAAAAGGTCAGACC 6042 Query 48193 AGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGAT 48252 ||||| | || | || || |||||||| | | || || ||||||||||||||||| Sbjct 6043 GGGCATCAGACCACGCTTCTTCAGCCAGAAGACCGATGCAAATGAGCCAGAGAAGAAGAT 6102 Query 48253 GCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGAT 48312 |||||| ||||| || || ||| || | | | |||| | ||||||||| | || Sbjct 6103 GCCCTCGACTGCAGCAAAAGCGACAAGTCGTTGGGCAAAAGTTGAGTTCTTGTCGGCTAT 6162 Query 48313 CCAGGAAAGCGCCCAGTCTGCCTTCTT 48339 ||| || |||||||| |||||||| Sbjct 6163 CCATCGCAGAGCCCAGTCGGCCTTCTT 6189 >seq40 Length=17677 Score = 113 bits (124), Expect = 8e-20 Identities = 422/658 (64%), Gaps = 19/658 (3%) Strand=Plus/Plus Query 213812 GACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCT 213871 ||||| || |||||| || ||||||| ||| || || ||| || || | | | Sbjct 2355 GACTCGCTTCATGAAGAGATCCGGGATCCAAAGGGCAAAGAATAGATCTCGAGCGCGGAC 2414 Query 213872 CTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGG 213931 || ||| || || || |||| ||| || || ||||||| ||| || ||||| || Sbjct 2415 TTCTTCCTTGCCGTGATTCTTCCGCAAATCCAGGAATTCAAAGACGTCGGCATGCCATGG 2474 Query 213932 CTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG---CCGCCCTGGTCCACCAGCCTGGC 213988 ||| | ||| ||||| || || || || | |||| || || || || || | ||| Sbjct 2475 CTCGAGGTACATGGCGAAAGCTCCGGGACGCTTGTTGCCTCCTTGATCGACATAGCGGGC 2534 Query 213989 CACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGC 214048 ||||||||| ||| || | || || | || ||||| || ||||| ||| | Sbjct 2535 GGTGTTGTTGAAGACGCGTAGCATAGGAACAATGCCATTGGAGGAGCCATTGGTGCCCCC 2594 Query 214049 TATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTT 214108 ||||||||||| | || | | | | ||| || || ||||||||||| ||| Sbjct 2595 GATATACGAGCCTGTAGCGCGAATGCGGTGGATGTTCAGGCCAATGCCACCGGCAGTCTT 2654 Query 214109 GGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAG 214168 ||||| | || || | | || || ||||||| | || || || || | | Sbjct 2655 CGAGATGAGAGCACACGTTTTGAGGGTGTCGTAGATGCCGTCGATACTATCCTCCTTCAT 2714 Query 214169 GTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGG 214228 || | ||||||||| || | ||| ||| | | ||||| ||||| | || || Sbjct 2715 GTCGATCAAGAAGCATGAGGACATCTGAGGCTGTGGGGTGCCAGCATTGAACAAGGTAGG 2774 Query 214229 GCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGAT 214288 | || ||| | | | || | ||| | ||| ||||||||| | ||| | ||| Sbjct 2775 GGACGCGTGGGTGAAGTATTTCTGAGACATGAGATGGTAGGTCTCGATGACCTTGTCGAT 2834 Query 214289 GTCGTGCTTGTGGATCTGTAGAGCGCACCTCATCAGCATGTGCTGGGGCCTCTCTATGGG 214348 || || | ||| || | |||| | ||| | ||||||||| || | ||| || Sbjct 2835 GTTGTCGTCGTGTATACCCACAGCGACACGCATAATCATGTGCTGTGGACGCTC---GGC 2891 Query 214349 TCCTTTGGGGCCCTTG------AGCAGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTA 214402 ||||| || ||| || ||||| || ||||| |||||||||||||||||||| Sbjct 2892 CACTTTG---CCATTGGTGCGGAGGAGGTATGATCGCTCGAGAGTCTTGAACCCAAAGTA 2948 Query 214403 GGAGTAG--GTATGATCGTTCCCGTGTATGAGGGCAGCGTCCAGCTCTTCCGCGTGCT 214458 |||| | | ||| | ||| | || ||| | || |||||||| ||||||| Sbjct 2949 TTGGTAGTTGAAGTCTCGGT--CGTAGACGATGGCCGAGTTGAGCTCTTCGGCGTGCT 3004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931513505626880