Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq40 190 4e-43 seq1499 107 4e-18 >seq40 Length=17677 Score = 190 bits (210), Expect = 4e-43 Identities = 454/678 (67%), Gaps = 14/678 (2%) Strand=Plus/Plus Query 221999 GGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATC 222058 || ||||||| | |||| | ||| ||| ||| | || ||||||||| ||||||||| Sbjct 2323 GGGCACATCAAAGTCCACTCACCATTGGCTTCGACTCGCTTCATGAAGAGATCCGGGATC 2382 Query 222059 CACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGA 222118 || || || || ||||||| | || || ||| ||||| || |||| || | Sbjct 2383 CAAAGGGCAAAGAATAGATCTCGAGCGCGGACTTCTTCCTTGCCGTGATTCTTCCGCAAA 2442 Query 222119 TCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGT 222178 |||| || ||||| | ||| || ||||| ||||| || || | ||| | ||| ||||| Sbjct 2443 TCCAGGAATTCAAAGACGTCGGCATGCCATGGCTCGAGGTACATGGCGAAAGCTCCGGGA 2502 Query 222179 CGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGC-GTTGAAGATGCGAAGGGTCGG 222237 ||||||||||| || ||||| || || | | | |||||||| ||| || | || Sbjct 2503 CGCTTGTTGCCTCCTTGATCGAC-ATAGCGGGCGGTGTTGTTGAAGACGCGTAGCATAGG 2561 Query 222238 TACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTT 222297 || | || ||||| || ||||||||| || |||| || || | | | Sbjct 2562 AACAATGCCATTGGAGGAGCCATTGGTGCCCCCGATATACGAGCCTGTAGCGCGAATGCG 2621 Query 222298 ACTGGCAGA-CATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAG 222356 ||| | || ||| || |||||||| |||||||| | || || | ||||| | Sbjct 2622 G-TGGATGTTCAGGCCAATGCCACCGGCAGTCTTCGAGATGAGAGCACACGTTTTGAGGG 2680 Query 222357 TGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCT 222416 |||| |||||| || ||| |||||||| | || | || || || || ||||||| Sbjct 2681 TGTCGTAGATGCCGTCGATACTATCCTCCTTCATGTCGATCAAGAAGCATGAGGACATCT 2740 Query 222417 GAGATTTGGTGGAACAGGCGTTAAACAGCGT--GGGACTGGCGTGTGTAAAGTAGCCCCT 222474 ||| | | || | || || |||| || ||||| ||||| || ||||| | Sbjct 2741 GAGGCTGTGGGGTGCCAGCATTGAACAAGGTAGGGGAC--GCGTGGGTGAAGTATTTCTG 2798 Query 222475 AGACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGC 222534 |||||| |||| ||| ||||| | ||| || |||||||||| |||| || || || Sbjct 2799 AGACATGAGATGGTAGGTCTCGATGACCTTGTCGATGTTGTCGTCGTGTATACCCACAGC 2858 Query 222535 GCATCTCATGTACATGTACTGGGGCCTCTC---CACAGGACCCTTGGAGCTGGAGAGCAG 222591 | | ||| ||||| ||| || | ||| ||| || |||| || | || || Sbjct 2859 GACACGCATAATCATGTGCTGTGGACGCTCGGCCACTTTGCCATTGGTGCGG---AGGAG 2915 Query 222592 GTACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAAC 222651 ||| ||| || |||||||||||||||||||| | | || ||||||| | ||| || Sbjct 2916 GTATGATCGCTCGAGAGTCTTGAACCCAAAGTATTGGTAGTTGAAGTCTCGGTCGTAGAC 2975 Query 222652 CACGGCGGCGTCCAGCTC 222669 | ||| | || ||||| Sbjct 2976 GATGGCCGAGTTGAGCTC 2993 >seq1499 Length=34637 Score = 107 bits (118), Expect = 4e-18 Identities = 165/233 (71%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 |||||| |||||||||||||||| | ||| |||||| || ||||||||||| || Sbjct 6592 ATATGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACTGCAGAAGAGATTGACCTC 6533 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATT--TTC-TCAAG 25593 |||||||| | ||| |||| || | ||| ||||| ||| || ||| || | Sbjct 6532 TCCAAGGACCTTCACGACTGGAACAACAGACTCAACGACGATGAGCGTTACTTCATCTCG 6473 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| ||||||||||| || || |||||||| || || |||||||| || ||| | Sbjct 6472 CACGTCTTGGCATTCTTCGCCGCATCTGATGGCATTGTCAACGAGAACCTCGTTGAGCGC 6413 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 |||| | || ||||| | ||||| || |||||||| ||||| || Sbjct 6412 TTCAGTGGTGAGGTGCAAATCCCCGAGGCTCGCTGCTTCTACGGCTTCCAAAT 6360 Score = 100 bits (110), Expect = 5e-16 Identities = 300/467 (64%), Gaps = 9/467 (2%) Strand=Plus/Minus Query 25859 AGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCA 25918 ||| | | || |||| | | || || || || |||||||| || ||||||||||| ||| Sbjct 6152 AGAACTCAACTTTTGCCCAACGACTTGTCGCTTTTGCTGCAGTCGAGGGCATCTTCTTCT 6093 Query 25919 GCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACT 25978 || || ||||| | |||||||||| ||| || || |||||||| ||| || Sbjct 6092 CTGGCTCATTTGCATCGGTCTTCTGGCTGAAGAAGCGTGGTCTGATGCCCGGTCTGACCT 6033 Query 25979 TTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCT 26038 |||||||||| |||||| |||| ||||| | |||| || ||||| || || || | Sbjct 6032 TTTCCAACGAACTCATCTCGCGGGATGAGGGAATGCACACTGACTTTGCTTGTCTCCTGT 5973 Query 26039 ACACGGGCCACTTGCTCCACAAACCTTCTCAAGAGACCGTCTACAGTA--TCATCAAAGA 26096 | | ||| | ||| || || || ||| | ||| | |||||| || Sbjct 5972 TCTC---ACACCTAAAGCACCGCCCCAGTCCGCAGGCCG--TGCAGGACGTCATCACCGA 5918 Query 26097 GGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCAT 26156 ||||| |||||| |||| ||| ||||||| Sbjct 5917 AGCTGTCAGCATCGAGCAGGAATTTTTGACGGAGGCTTTACCCTGTGGTCTATTGGGCAT 5858 Query 26157 GAACAACAGACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCT 26216 |||| | ||||||| |||||||| || | |||||||||| |||||| | | Sbjct 5857 GAACGCAAACCTCATGAAGCAATACATCGAATTCGTGGCCGACCGACTGCTGCTCGCCTT 5798 Query 26217 GGG-ACTCGCCAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGT 26275 ||| | || || | |||| || | || ||||| ||||| ||||| ||| || Sbjct 5797 GGGTAATCAAAAGTAT-TACAAAGCGACGAATCCGTTTGACTTCATGGAGTCCATCTCTC 5739 Query 26276 TGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCAA 26322 ||| || |||||||| |||||||| || | || || || |||||| Sbjct 5738 TGGCGGGCAAGACCAATTTCTTTGAGAAACGCGTTGGTGATTATCAA 5692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928825561302080