Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq613 96.9 2e-14 seq1307 87.8 1e-11 >seq613 Length=4587 Score = 96.9 bits (106), Expect = 2e-14 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805 || |||||||| || || || || ||||| |||||||| || |||||||| || ||| Sbjct 2140 ACAGTTCCAGCCTACTTCAACGACTCTCAGCGTCAAGCTACCAAAGATGCCGGTCTTATT 2081 Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865 |||||||| || || | ||||| || || ||||| || ||||| || |||| || ||| Sbjct 2080 GCAGGTCTGAACGTCCTCCGTATCATCAACGAACCTACTGCAGCAGCGATTGCCTACGGT 2021 Query 474866 CTTGATAAGAA 474876 || || ||||| Sbjct 2020 CTCGACAAGAA 2010 >seq1307 Length=69414 Score = 87.8 bits (96), Expect = 1e-11 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || ||||| |||||||||||||| || ||||| |||||||| || ||||||||||||||| Sbjct 38297 TCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGTTGATCCGGGGGAATTCCTTCCTTG 38238 Query 480678 TCTTGAATCTT 480688 || || ||||| Sbjct 38237 TCCTGGATCTT 38227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268108123230236