Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq40 165 1e-35 >seq40 Length=17677 Score = 165 bits (182), Expect = 1e-35 Identities = 391/584 (67%), Gaps = 15/584 (3%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 |||||| ||||| | ||||| ||||| | || || |||| || |||| || ||| Sbjct 2882 CCACAGCACATGATTATGCGTGTCGCTGTGGGTATACACGACGACAACATCGACAAGGTC 2823 Query 75272 TTGGAGACATACGACAAGATGTCCCAAGGTATG-TTCATTCACGCAACACCAACCCTCTT 75330 | ||||| ||| | ||||| || | || |||| ||||| | || ||| | || Sbjct 2822 ATCGAGACCTACCATCTCATGTCTCA-GAAATACTTCACCCACGCGTCCCCTACCTTGTT 2764 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 ||||||||| || ||| || ||||||||| |||||| | |||| || |||||||| Sbjct 2763 CAATGCTGGCACCCCACAGCCTCAGATGTCCTCATGCTTCTTGATCGACATGAAGGAGGA 2704 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 ||| |||| ||||| | || || | |||||| | ||||| ||| || || Sbjct 2703 TAGTATCGACGGCATCTACGACACCCTCAAAACGTGTGCTCTCATCTCGAAGACTGCCGG 2644 Query 75451 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGGG-ACA 75508 || ||||| || ||||||| | | || | | ||||||| ||||||| || Sbjct 2643 TGGCATTGGCCTGAACATCCACCGCATTCGCGCTA--CAGGCTCGTATATCGGGGGCACC 2586 Query 75509 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 75568 ||||| || |||| ||| |||| ||||| ||||| || ||| ||| || |||||| Sbjct 2585 AATGGCTCCTCCAATGGCATTGTTCCTATGCTACGCGTCTTCAACAACACCGCCCGCTAT 2526 Query 75569 GTAAATCAAGCGGG------GCGTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGG 75622 || |||||| || ||||| | || | |||| | ||| | || |||||| Sbjct 2525 GTCGATCAAGGAGGCAACAAGCGTCCC---GGAGCTTTCGCCATGTACCTCGAGCCATGG 2469 Query 75623 CATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGG 75682 |||||||| || | || ||||| || || || || || || | ||||| | || Sbjct 2468 CATGCCGACGTCTTTGAATTCCTGGATTTGCGGAAGAATCACGGCAAGGAAGAAGTCCGC 2409 Query 75683 TGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAG 75742 | ||||||| || | |||| ||||| || || || ||||||||||| || || | Sbjct 2408 GCTCGAGATCTATTCTTTGCCCTTTGGATCCCGGATCTCTTCATGAAGCGAGTCGAAGCC 2349 Query 75743 GGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCT 75786 |||| | ||| || | | || || || |||| || ||||| Sbjct 2348 AATGGTGAGTGGACTTTGATGTGCCCTAACGAGGCTCCGGGTCT 2305 Score = 84.2 bits (92), Expect = 3e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 75899 CAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAAC 75958 ||||| |||||||| | || | ||||| ||||||||||| ||| ||||| ||| Sbjct 2139 CAGACCGAGACTGGCAACCCGTTCATGCTATACAAGGATGCCGCCAACCGCAAGAGCAAC 2080 Query 75959 CAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACA 76018 || ||||| |||| || ||| ||||| || | |||||||| ||| | || ||||| Sbjct 2079 CAGAAGAACCTGGGTACCATCCGTAGCTCCAACTTGTGCACGGAGATTATCGAATACACC 2020 Query 76019 GATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAA 76067 | |||||| || || |||||| |||| || | ||||| |||| Sbjct 2019 GCGCCTGATGAGGTTGCAGTCTGCAATCTGGCTTCCCTTGCCCTCCCAA 1971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596557243552160