Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq1599 188 9e-43 seq1307 152 7e-32 seq1609 116 5e-21 seq59 95.1 2e-14 seq1625 93.3 6e-14 >seq1599 Length=14205 Score = 188 bits (208), Expect = 9e-43 Identities = 477/723 (66%), Gaps = 17/723 (2%) Strand=Plus/Plus Query 195719 ACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATT 195778 || || || || ||||||| || || ||||| ||||| ||||| || | || || Sbjct 12242 ACAGTCCCCGCCTACTTCAACGACAACCAGCGACAAGCGACCAAGGATGCAGGCGCCATC 12301 Query 195779 GCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGT 195838 || | || | ||| | || ||||| || ||||| || || || || || || ||| Sbjct 12302 GCAGACCTGCAAGTCCTTCGGATCATCAACGARCCAACRGCTGCKGCCATCGCCTAYGGT 12361 Query 195839 CTGGA--CAAGAACAAGGACGAAG-ATAAAAATGTATTGATCTTTGATCTCGGTGGTGGT 195895 |||| || | | | |||| | ||||| ||||||| ||||| ||||| || Sbjct 12362 CTGGGGTCAGGGAAATCCGAGAAGGAGMGGAATGTCTTGATCTACGATCTTGGTGGAGGA 12421 Query 195896 ACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCT 195955 || || ||||| ||| | ||| |||| |||| || | ||| || ||||| || ||| Sbjct 12422 ACCTTCGATGTGTCATTGCTCCATATCCAAGGCGGCGTTTTCACCGTCAAGGCGACCGCT 12481 Query 195956 GGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGTCTGAT 196015 || || |||||||| |||||| ||||||||||| | || ||| ||| || | Sbjct 12482 GGGGACACTCATCTTGGTGGTCAAGATTTCGATACCAAYCTGCTCGATCACTTCAAGAAA 12541 Query 196016 GAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTT 196075 || |||| |||| | ||||||||| | |||||| | || | || || || ||||| Sbjct 12542 GARTTCCAAAGAAAAACCAAGAAAGATCTATCTGGAGACGCTCGTGCCCTGCGGCGGCTG 12601 Query 196076 AGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGG--CTCAAACAATGGTTG 196133 |||||| | || || || || || ||||| || || |||| |||| || | || | Sbjct 12602 AGGACTTCCTGCGAGCGAGCKAAGCGAACGCTATC--GAACGGTACTCAGACCACTGTCG 12659 Query 196134 AGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTG 196193 ||||||||||| | || || || || ||| | | ||||| || || ||||| | Sbjct 12660 AGATTGATTCGCTTTTCGAGGGCGAGGATTTCAACGCTCAAATTACGCGGGCTCGTTTCG 12719 Query 196194 AAGAGTTAAACTCTGATTTGTTTA--GGAAGTGTATGGAACCTGTTGAACAAGTACTTCG 196251 | || |||| | | || | || | ||| || || || | ||||| || Sbjct 12720 AGGATCTAAATGCAAAGGCCTTCAACGGCA--CTATTGACCCAGTACAGCAAGTGCTGAA 12777 Query 196252 TGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCG 196311 ||||| | | || ||| || || || || ||||| ||||| ||||| || || || Sbjct 12778 AGACGCCAGCTTAGACAAGAGCAAAGTCGACGAGATTGTGCTTGTTGGAGGGTCCACRCG 12837 Query 196312 TATTCCGAAGATTCAACAGATGCTTTCTAGC---TTCTTCAATAATAAAGATTTAAACAA 196368 ||| || | ||| ||| || |||| ||| ||||| | || | | | || Sbjct 12838 TATCCCMAGGATACAAAAGCTGCT---CAGCGATTTCTTTGACGGCAAGAAGCTGGAGAA 12894 Query 196369 AACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTC 196428 | ||||||||||| || || || || || ||||| ||||| ||||| | ||| || || Sbjct 12895 GAGCATCAACCCGGACGAGGCTGTGGCCTAYGGTGCAGCCGTCCAGGCGGGTATCCTATC 12954 Query 196429 AGG 196431 || Sbjct 12955 GGG 12957 >seq1307 Length=69414 Score = 152 bits (168), Expect = 7e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||| || || ||| | || || || || ||||| ||||| || || || ||| Sbjct 38651 ATGCAAATCTTCGTCAAGACCTTGACAGGCAAGACCATCACTCTCGAAGTAGAATCTTCA 38710 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||||||||| || |||| |||||||| |||||||| |||||||| || || || || Sbjct 38711 GACACAATCGACAATGTCAAGGCCAAGATACAAGATAAAGAAGGCATCCCCCCGGACCAA 38770 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || | || || || || ||||| | |||||||| || || ||| | || |||||| Sbjct 38771 CAGCGCTTGATCTTCGCCGGCAAACAATTAGAAGATGGCCGCACACTCTCCGACTACAAC 38830 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || || || || || ||||| || || || | || || ||||| Sbjct 38831 ATCCAGAAAGAATCCACCCTACATCTCGTCCTCCGTCTGCGCGGTGG 38877 Score = 150 bits (166), Expect = 2e-31 Identities = 167/222 (75%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 171874 GTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGAT 171933 || || ||||| ||||| || || || ||||| ||||| ||||| || ||||| ||||| Sbjct 38435 GTCAAGACCCTGACTGGCAAGACCATTACCCTGGAGGTGGAGTCTTCGGACACCATCGAC 38494 Query 171934 AACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATT 171993 || | || ||||||||||| || || || || || || |||||||| || || || || Sbjct 38495 AATGTAAAGGCCAAGATTCAGGACAAAGAGGGTATCCCTCCCGATCAACAGCGTCTCATC 38554 Query 171994 TTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAG 172053 || || || || ||||| ||||| || ||||| ||| | || |||||| | |||||||| Sbjct 38555 TTCGCCGGCAAGCAGCTCGAAGACGGCCGTACTCTCTCCGACTACAACATCCAAAAGGAA 38614 Query 172054 TCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG--TGCAA 172093 || ||||| || || || || | || || ||||| ||||| Sbjct 38615 TCCACTCTTCATCTCGTCCTCCGTCTCCGTGGTGGCATGCAA 38656 Score = 143 bits (158), Expect = 4e-29 Identities = 147/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| ||||| || ||||| || ||||| || || || || |||||| Sbjct 38879 ATGCAGATCTTTGTGAAGACCCTGACCGGAAAGACCATCACACTGGAAGTCGAATCGTCA 38938 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || |||| || ||||| || || ||||| || || ||||| || || Sbjct 38939 GACACGATAGACAATGTCAAGGCGAAGATCCAGGACAAGGAGGGTATCCCACCGGACCAA 38998 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || ||||| || |||||||| || ||||| || || || | || |||||| Sbjct 38999 CAGCGCCTGATCTTTGCAGGCAAACAGCTGGAGGATGGGCGGACACTGTCGGACTACAAC 39058 Query 172042 GTTCAAAAGGAG 172053 | || |||||| Sbjct 39059 ATCCAGAAGGAG 39070 >seq1609 Length=13884 Score = 116 bits (128), Expect = 5e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 171870 CTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAAT 171929 ||| || |||||||| || || || || |||||||||||||| ||||| || ||||| || Sbjct 319 CTTCGTCAAAACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCCGACACCAT 378 Query 171930 CGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACT 171989 ||| || |||| |||||||| || || ||||| || || || || || ||||| || | Sbjct 379 CGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGGATCCCGCCGGACCAGCAGCGCTT 438 Query 171990 TATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAA 172049 || || || || || ||||| || || || | ||| | ||||| ||| | ||||| Sbjct 439 GATCTTCGCGGGCAAGCAGCTCGAGGACGGGAGGACCTTGAGCGATTATAACATCCAAAA 498 Query 172050 GG 172051 || Sbjct 499 GG 500 >seq59 Length=11125 Score = 95.1 bits (104), Expect = 2e-14 Identities = 81/100 (81%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| |||||||| || ||||| || || || ||||||||||| ||||| ||||| || Sbjct 4091 ATGCAGATCTTTGTCAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCTTCG 4150 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGG 171961 |||||||| || || |||| || |||||||||| | ||| Sbjct 4151 GACACAATTGACAATGTCAAGGCAAAGATTCAAGGTCAGG 4190 Score = 87.8 bits (96), Expect = 2e-12 Identities = 97/128 (76%), Gaps = 1/128 (1%) Strand=Plus/Plus Query 171953 AAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTG 172012 |||| |||||||| || ||||| || |||||||| || || || || || || ||||| | Sbjct 4236 AAGACAAGGAAGGAATCCCACCTGACCAGCAACGCCTGATCTTCGCGGGCAAGCAGCTCG 4295 Query 172013 AAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTC 172072 | || || || || ||| | || ||||| | ||||||||||| || || |||| || || Sbjct 4296 AGGACGGTCGCACTCTCTCAGACTACAATATCCAAAAGGAGTCCACGCTCCACC-TGGTC 4354 Query 172073 TAAGGCTT 172080 | | |||| Sbjct 4355 TTACGCTT 4362 >seq1625 Length=168088 Score = 93.3 bits (102), Expect = 6e-14 Identities = 219/327 (67%), Gaps = 4/327 (1%) Strand=Plus/Minus Query 198450 TTCAAGGATGTTGAGGGTATCGACTCAGCTAAGGATGAGCTCGAGGAGATTGTTGATTTT 198509 |||||||| || | || || ||| ||| ||| | ||| || |||| |||| ||| Sbjct 111638 TTCAAGGACGTGGCTGGCATGGACGAAGCGAAGCAAGAGATCATGGAGTTTGTCAGCTTT 111579 Query 198510 CTTAAAAACCCCGAAAAGTACTATGGAAGTGGTGCCCGAATCCCACGTGGTGCTCTTCTC 198569 || ||| | |||| | || | || |||||| || || || || || | || Sbjct 111578 CTGAAAGAGCCCGGCCAATATCAAAGACTGGGTGCCAAGATTCCTCGAGGAGCATTGCTT 111519 Query 198570 GCCGGTGCCCCGGGTACTGGTAAAACCCTTCTAGCTCGTGCTATCGCGGGTGAATCGAGT 198629 | ||| | || ||||| ||||| || | || || || | || || ||||| | Sbjct 111518 TCAGGTCCACCTGGTACAGGTAAGACAATGCTGGCCAAGGCGACTGCCGGCGAATCTGGC 111459 Query 198630 GTCCCCTTTCTTCAGTGCTCCGCGG--CGAGTTTCATCGAGATGTTCGTTGGTGTTGGTG 198687 || || |||||||||| | |||| || ||| | ||||| ||||| |||||||||| Sbjct 111458 GTTCC-TTTCTTCAGTATTA-GCGGTTCGGAGTTCGTTGAGATCTTCGTCGGTGTTGGTG 111401 Query 198688 CTAAGCGCGTCCGGGAACTCTTTGAGCAAGCACGTGAAAATCAACCATGTATCATCTTCA 198747 || || ||||| || || || || ||| || | | ||||| || ||||||| Sbjct 111400 CTTCACGTGTCCGAGATCTGTTCCAGACAGCTCGCAAGAGCGCGCCATGCATTATCTTCA 111341 Query 198748 TTGATGAGATTGACGCTGTTGGTAAGA 198774 |||| || || ||||||||||| |||| Sbjct 111340 TTGACGAAATCGACGCTGTTGGCAAGA 111314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657848774025040