Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq1307 109 1e-18 >seq1307 Length=69414 Score = 109 bits (120), Expect = 1e-18 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || || |||||||| || || || || || | ||||||||| || || || ||||||||| Sbjct 38805 TCTTCTAATTGTTTGCCGGCGAAGATCAAGCGCTGTTGGTCCGGGGGGATGCCTTCTTTA 38746 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 |||||||| || || ||||| || || ||||| ||||||||||| ||||| ||| Sbjct 38745 TCTTGTATCTTGGCCTTGACATTGTCGATTGTGTCTGAAGATTCTACTTCGAGAGTGATG 38686 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || || || || | ||| || ||||| Sbjct 38685 GTCTTGCCTGTCAAGGTCTTGACGAAGATTTGCAT 38651 Score = 84.2 bits (92), Expect = 4e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || |||| ||||| || ||||| || | | ||||||||| ||||| || || || || Sbjct 39033 TCCTCCAGCTGTTTGCCTGCAAAGATCAGGCGCTGTTGGTCCGGTGGGATACCCTCCTTG 38974 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || || || || || ||||| ||| || ||||||||||| ||||| || || ||| Sbjct 38973 TCCTGGATCTTCGCCTTGACATTGTCTATCGTGTCTGACGATTCGACTTCCAGTGTGATG 38914 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || || | || || | || ||||||||| Sbjct 38913 GTCTTTCCGGTCAGGGTCTTCACAAAGATCTGCATT 38878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905117252370600