Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq40 131 5e-25 seq369 96.9 1e-14 seq379 87.8 5e-12 >seq40 Length=17677 Score = 131 bits (144), Expect = 5e-25 Identities = 355/538 (66%), Gaps = 13/538 (2%) Strand=Plus/Plus Query 155970 TCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGC 156029 || || | ||||||||||||||| | || | |||||| | || | ||| |||| Sbjct 2416 TCTTCCTTGCCGTGATTCTTCCGCAAATCCAGGAATTCAAAGACGTCGGCATGCCATGGC 2475 Query 156030 TCCAGATACATAGCAAAACTACC---ATTCCTCTTGCCACCCTGATCTACATACCGAGCA 156086 || || ||||| || ||| || | | | ||||| || ||||| ||||| || || Sbjct 2476 TCGAGGTACATGGCGAAAGCTCCGGGACGCTTGTTGCCTCCTTGATCGACATAGCGGGCG 2535 Query 156087 GTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGA 156146 || || |||||||| | ||||||||||| ||| |||||||| | ||||||||| || | Sbjct 2536 GTGTTGTTGAAGACGCGTAGCATAGGAACAATGCCATTGGAGGAGCCATTGGTGCCCCCG 2595 Query 156147 ATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTA 156206 |||| ||| || | | ||||| || || | || ||||| ||||| | || Sbjct 2596 ATATACGAGCCTGTAGCGCGAATGCGGTGGATGTTCAGGCCAATGCCACCGGCAGTCTTC 2655 Query 156207 GAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCA-- 156264 || || |||| || || | || | | | || || || ||| ||| || | || Sbjct 2656 GAGATGAGAGCACACGTTTTGAGGGTGTCGTAGATGCCGTCGATACTATCCTCCTTCATG 2715 Query 156265 TTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAG 156324 | ||| ||| |||| || | ||||| |||| || ||||| ||||| | |||| Sbjct 2716 TCGAT-CAAGA-AGCATGAGGACATCTGAGGCTGTGGGGTGCCAGCATTGAACAAGGTAG 2773 Query 156325 GTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAA 156384 | | || || | || || || | |||||| || ||| ||||| | | ||| || | Sbjct 2774 GGGACGCGTGGGTGAAGTATTTCTGAGACATGAGATGGTAGGTCTCGATGACCTTGTCGA 2833 Query 156385 GATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAA 156444 || |||| |||| | || ||| | ||| ||| ||||| |||||||| | Sbjct 2834 TGTTGTCGTCGTGTATACCCACAGCGACACGCATAATCATGTGCTGTGGACGCTCGGC-- 2891 Query 156445 TCACT---CCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 |||| |||| | || || ||||||| || || ||||| || ||||| || || Sbjct 2892 -CACTTTGCCATTGGTGCGGAGGAGGTATGATCGCTCGAGAGTCTTGAACCCAAAGTA 2948 >seq369 Length=6626 Score = 96.9 bits (106), Expect = 1e-14 Identities = 180/263 (68%), Gaps = 4/263 (2%) Strand=Plus/Minus Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642 ||||| |||||||| || || || || ||| | ||| || || || ||||| || || Sbjct 2859 CTTGACCAAACGACGTTGGATGTAGCCGGTTTCCGCTGTCTTGACCGCAGTATCGATAAG 2800 Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT--AGCCCCCCAATA 302700 ||| |||| || |||| ||||||||||| | || || ||| | || | || | Sbjct 2799 ACCCTCACGTCCTGCCATGGCATGGAAGAAGAATTC-YGTGGGCGTCAARCCACGTAA-A 2742 Query 302701 AAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGC 302760 |||| |||| ||||| || || | ||| | |||| || || || || || ||| Sbjct 2741 TAGGAATTCTCGACGAAGCCTCGTGACTCCGCAGAATAATCATCTTTCGTGAAATGGGGC 2682 Query 302761 AGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGG 302820 | |||| | || ||||| | ||||| ||||| || ||||| |||||||||| | Sbjct 2681 AACGTCCGATACTTGAAGCCGAAGGGGATMCGCTTGCCCTCAACTGATTGCTGTCCCACG 2622 Query 302821 CACGAAATCATCTGCGAAATATT 302843 || | ||||||| ||||| || Sbjct 2621 ACCGCAGTCATCTGTGAAATGTT 2599 >seq379 Length=117818 Score = 87.8 bits (96), Expect = 5e-12 Identities = 114/155 (74%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 252530 TATCCATCCTATTATCATAATTTGTAACATACATACCAAGCGCCTGCTTTCCCATAGCAC 252589 ||||||| | | |||||||||||| | | | || | |||||||| ||||| ||| Sbjct 84901 TATCCATGCGAACATCATAATTTGTCAGGAAGACGCCCATTGCCTGCTTCCCCATTGCAG 84842 Query 252590 TCTGGTAAGTATTTCTGGGAGACTGATTGTTTTCCGGGAAAGGAATGCATGATGCTACA- 252648 |||||| || |||||||| |||||||||| || || ||||| || ||| | ||| Sbjct 84841 ACTGGTATGTGTTTCTGGGCGACTGATTGTGATCGGGAAAAGGGAT-AATGCTCGCACAT 84783 Query 252649 ACACCGAAGATAGTGCTTGGGTGAATTTCACAGTG 252683 | || | ||| ||||||| ||||| |||||||| Sbjct 84782 ATGCCCAGGATCATGCTTGGATGAATCTCACAGTG 84748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471786352852409