Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq40 134 2e-25 seq331 109 7e-18 seq1086 102 1e-15 seq1499 89.7 6e-12 >seq40 Length=17677 Score = 134 bits (148), Expect = 2e-25 Identities = 209/299 (70%), Gaps = 0/299 (0%) Strand=Plus/Plus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 || ||||| ||||| || |||| ||| |||||||| ||||| || || | ||| ||||| Sbjct 2518 TGATCGACATAGCGGGCGGTGTTGTTGAAGACGCGTAGCATAGGAACAATGCCATTGGAG 2577 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 ||| ||||||||| | | || | ||| | ||||| | ||| | | ||| Sbjct 2578 GAGCCATTGGTGCCCCCGATATACGAGCCTGTAGCGCGAATGCGGTGGATGTTCAGGCCA 2637 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 ||||| ||||| | ||| |||||||| || ||| |||||| |||||||||||||| ||| Sbjct 2638 ATGCCACCGGCAGTCTTCGAGATGAGAGCACACGTTTTGAGGGTGTCGTAGATGCCGTCG 2697 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 || || |||||||||| | | ||||| || || | || || || | ||||| Sbjct 2698 ATACTATCCTCCTTCATGTCGATCAAGAAGCATGAGGACATCTGAGGCTGTGGGGTGCCA 2757 Query 1630306 GCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 || ||||| | || || | ||| |||||| | | | | |||||| | |||||| Sbjct 2758 GCATTGAACAAGGTAGGGGACGCGTGGGTGAAGTATTTCTGAGACATGAGATGGTAGGT 2816 Score = 91.5 bits (100), Expect = 2e-12 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1627409 TGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGGAGCGAGTTGC 1627468 ||||||| |||||||| || |||| ||||||||||||| | ||||||||||| || |||| Sbjct 1485 TGTTGCCGAGGATCTGGGATGTCGAGGCCGTGGGCATGGGGGCCACGAGGAGGGAATTGC 1544 Query 1627469 GCAGGCCGTGC-TGTCGAACTAGCGCGCGCAGCGCGTCCCAGTCCCAGCGGCCG 1627521 | | |||||| || ||| | | | || |||| |||||||||||| || || Sbjct 1545 GAACACCGTGCTTGGCGATGTTG-GACCGGAGCGTATCCCAGTCCCAGAGGTCG 1597 >seq331 Length=328426 Score = 109 bits (120), Expect = 7e-18 Identities = 147/199 (74%), Gaps = 7/199 (4%) Strand=Plus/Plus Query 733054 TCAAGATCGTGACGCGCGCCATGCGCCAGCCCGAGTTGGGCGACAAACTGTCGTCGCGCC 733113 |||||||| ||| ||| | |||| || ||| | ||||||||| | || || |||| Sbjct 80023 TCAAGATCCAGACCCGCCAGACCCGCCGCCCGGAGATCGGCGACAAATTCTCCTCCCGCC 80082 Query 733114 ACGGCCAAAAGGGCACCGTGGGCAGCGTGCGCTCCACCGAG--GACATGCCCTGGTCGCC 733171 |||||||||||||| |||||| |||| || | | | || |||||||||| || || Sbjct 80083 ACGGCCAAAAGGGCGTGGTGGGCCTCGTG-GC-CGAACAAGTCGACATGCCCT--TCTCC 80138 Query 733172 GCGCGGCGGCGCCACGCCCGACATCGTGATCAACCCGCACGCCATCCCGTCGCGCATGAC 733231 | | |||| ||||||||| | || |||||||||| | |||||||||||||||| Sbjct 80139 GA-CAGCGGGATGGTCCCCGACATCATCATGAACCCGCACGGCTTCCCGTCGCGCATGAC 80197 Query 733232 CATGGGCAAGATGCTCGAG 733250 | || || ||||||||| Sbjct 80198 GGTTGGGAAAATGCTCGAG 80216 >seq1086 Length=456340 Score = 102 bits (112), Expect = 1e-15 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || ||||| || || ||||||||| | || || || |||| |||||| | || || ||| Sbjct 222419 GCTGCCAATTATCTTGACATCAAGGCGCTCCTTGACGTTGGCTGCAAGACCGTTGCAAAC 222478 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 ||||||||||| ||||| |||||||| |||||||| || || |||||| || Sbjct 222479 ATGATCAAGGGAAAGTCTCCCGAGGAAATCCGCAAAACGTTCAACATCCAG 222529 >seq1499 Length=34637 Score = 89.7 bits (98), Expect = 6e-12 Identities = 136/188 (72%), Gaps = 13/188 (7%) Strand=Plus/Plus Query 869187 CGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCC 869246 ||||| ||| | ||||||| ||||| || |||||||| || || |||||||| |||| Sbjct 6011 CGCGA--GATGAGTTCGTTGGAAAAGGTCAGACCGGGCATCAGACCACGCTTCTTCAGCC 6068 Query 869247 AAAAGATGGC-GCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATG 869305 | |||| | ||| || ||| ||||| |||||||||||||| || ||||| ||| Sbjct 6069 AGAAGACCGATGCA-AATGAGCCAGAGAAGAAGATGCCCTCGACTGCAGCAAAAGCGACA 6127 Query 869306 AGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTG---ATCCACTTCATCGCCCAGTCG 869362 || || | |||||| || ||| | ||||| | ||||| || ||||||||| Sbjct 6128 AGTCGTTGGGCAAA--AGTTGAG----TTCTTGTCGGCTATCCATCGCAGAGCCCAGTCG 6181 Query 869363 GCCTTTTT 869370 ||||| || Sbjct 6182 GCCTTCTT 6189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107003218820269