Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1307 134 1e-26 seq1609 91.5 1e-13 seq1188 91.5 1e-13 seq59 91.5 1e-13 >seq1307 Length=69414 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || ||||| || || || || || ||||| ||| | | Sbjct 38879 ATGCAGATCTTTGTGAAGACCCTGACCGGAAAGACCATCACACTGGAAGTCGAATCGTCA 38938 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| |||| | || || |||||||| ||||| || || || || || || ||| Sbjct 38939 GACACGATAGACAATGTCAAGGCGAAGATCCAGGACAAGGAGGGTATCCCACCGGACCAA 38998 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||||| || ||||||||||||||| | | | |||| || || ||| Sbjct 38999 CAGCGCCTGATCTTTGCAGGCAAACAGCTGGAGGATGGGCGGACACTGTCGGACTACAAC 39058 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || ||||||||| |||| |||| ||||| Sbjct 39059 ATCCAGAAGGAGAGCACCCTTCACTTGGTGCTGCGTCTGCGTGGAGG 39105 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || | || || || || || || |||||||||||| | | Sbjct 38651 ATGCAAATCTTCGTCAAGACCTTGACAGGCAAGACCATCACTCTCGAAGTAGAATCTTCA 38710 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || || ||||| ||||| |||||||| || || || || ||| Sbjct 38711 GACACAATCGACAATGTCAAGGCCAAGATACAAGATAAAGAAGGCATCCCCCCGGACCAA 38770 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||| ||||| ||||| | || ||| | | | || || || ||| Sbjct 38771 CAGCGCTTGATCTTCGCCGGCAAACAATTAGAAGATGGCCGCACACTCTCCGACTACAAC 38830 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || ||||| || ||||| | || | || ||||||| || Sbjct 38831 ATCCAGAAAGAATCCACCCTACATCTCGTCCTCCGTCTGCGCGGTGG 38877 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 || || || || || || || ||||| || || || || | | ||||| | || | Sbjct 38438 AAGACCCTGACTGGCAAGACCATTACCCTGGAGGTGGAGTCTTCGGACACCATCGACAAT 38497 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 ||||| ||||| || |||||||| || || |||||||||||||| ||| | ||||| Sbjct 38498 GTAAAGGCCAAGATTCAGGACAAAGAGGGTATCCCTCCCGATCAACAGCGTCTCATCTTC 38557 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898 ||||| || ||||| || || | | | || || || ||||| ||||||||||| Sbjct 38558 GCCGGCAAGCAGCTCGAAGACGGCCGTACTCTCTCCGACTACAACATCCAAAAGGAATCC 38617 Query 24899 ACACTACA 24906 || || || Sbjct 38618 ACTCTTCA 38625 >seq1609 Length=13884 Score = 91.5 bits (100), Expect = 1e-13 Identities = 125/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 ||||| || || || || || || || ||||| || || || ||||||| | || | Sbjct 326 AAAACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCCGACACCATCGACAAT 385 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || || |||||||| ||||| || || || || || || || || || |||||||| Sbjct 386 GTCAAGGCCAAGATCCAGGACAAGGAGGGGATCCCGCCGGACCAGCAGCGCTTGATCTTC 445 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGG 24893 || || || ||||| ||||| ||| | | || ||||||||||| ||||||| Sbjct 446 GCGGGCAAGCAGCTCGAGGACGGGAGGACCTTGAGCGATTATAACATCCAAAAGG 500 >seq1188 Length=31586 Score = 91.5 bits (100), Expect = 1e-13 Identities = 125/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 ||||| || || || || || || || ||||| || ||| || ||||||| | || | Sbjct 1531 AAAACCCTGACGGGCAAGACCATCACTCTCGAGGTCGAATCCTCCGACACCATCGACAAT 1472 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || || |||||||| ||||| || || || || || || || || || |||||||| Sbjct 1471 GTCAAGGCCAAGATCCAGGACAAGGAGGGGATCCCGCCGGACCAGCAGCGCTTGATCTTC 1412 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGG 24893 || || || ||||| ||||| ||| | | || ||||||||||| || |||| Sbjct 1411 GCGGGCAAGCAGCTCGAGGACGGGAGGACCTTGAGCGATTATAACATCCAGAAGG 1357 >seq59 Length=11125 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24791 ATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAG 24850 ||| ||||||| |||||||| || || || || ||||| ||||||| || || || ||| Sbjct 4232 ATCAAAGACAAGGAAGGAATCCCACCTGACCAGCAACGCCTGATCTTCGCGGGCAAGCAG 4291 Query 24851 CTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTG 24910 || ||||| | | | ||||| || || || |||||||| || || || ||| || Sbjct 4292 CTCGAGGACGGTCGCACTCTCTCAGACTACAATATCCAAAAGGAGTCCACGCTCCACCTG 4351 Query 24911 GTGTTGCGATTGCGCGGAGG 24930 || || || ||||||||||| Sbjct 4352 GTCTTACGCTTGCGCGGAGG 4371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449888281495960