Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq40 136 6e-26 seq331 104 4e-16 seq1086 102 1e-15 seq1499 86.0 1e-10 >seq40 Length=17677 Score = 136 bits (150), Expect = 6e-26 Identities = 179/248 (72%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 || ||||||||||| || |||| ||| |||||||| ||||| || |||| ||| ||||| Sbjct 2518 TGATCGACATAGCGGGCGGTGTTGTTGAAGACGCGTAGCATAGGAACAATGCCATTGGAG 2577 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 ||| ||||||||| | | || | ||| | ||||| | ||| | | ||| Sbjct 2578 GAGCCATTGGTGCCCCCGATATACGAGCCTGTAGCGCGAATGCGGTGGATGTTCAGGCCA 2637 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 ||||| ||||| | ||| |||||||| || ||| |||| || || ||||||||||| ||| Sbjct 2638 ATGCCACCGGCAGTCTTCGAGATGAGAGCACACGTTTTGAGGGTGTCGTAGATGCCGTCG 2697 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780 || || |||||||||| | || ||||| || || | || || | | ||||| Sbjct 2698 ATACTATCCTCCTTCATGTCGATCAAGAAGCATGAGGACATCTGAGGCTGTGGGGTGCCA 2757 Query 2073781 GCATTGAA 2073788 |||||||| Sbjct 2758 GCATTGAA 2765 >seq331 Length=328426 Score = 104 bits (114), Expect = 4e-16 Identities = 185/264 (70%), Gaps = 11/264 (4%) Strand=Plus/Plus Query 653619 TCAAGATCGTCACCCGCGCCATGCGCCAGCCCGAGGTGGGCGACAAACTGTCGTCGCGCC 653678 |||||||| |||||| | |||| || ||| | ||||||||| | || || |||| Sbjct 80023 TCAAGATCCAGACCCGCCAGACCCGCCGCCCGGAGATCGGCGACAAATTCTCCTCCCGCC 80082 Query 653679 ACGGGCAAAAGGGCACCGTGGGCAGCGTGCGCTCGACCGAG--GAAATGCCGTGGTCGCC 653736 |||| ||||||||| |||||| |||| || ||| | || || ||||| | || || Sbjct 80083 ACGGCCAAAAGGGCGTGGTGGGCCTCGTG-GC-CGAACAAGTCGACATGCCCT--TCTCC 80138 Query 653737 GC--GCGGGGGCGCCACGCCCGACATCGTCATCAACCCGCACGCCATCCCGTCGCGCATG 653794 | ||||| | | ||||||||| |||| |||||||||| | |||||||||||||| Sbjct 80139 GACAGCGGGATGGTC---CCCGACATCATCATGAACCCGCACGGCTTCCCGTCGCGCATG 80195 Query 653795 ACCATGGGCAAGATGATGGAGGCCCTCCTGGGCAAGGTGGCCTGCCGCGAGGGCTACGTG 653854 || | || || ||| | ||| || |||||| | | | || | | ||| | || Sbjct 80196 ACGGTTGGGAAAATGCTCGAGCTGGTCGCGGGCAAAGCCGGCGTCCTCAACGGCGAGCTG 80255 Query 653855 GGCGACGGCACCCCGTTTGGCGGC 653878 | |||||||| |||| || ||| Sbjct 80256 GAGTACGGCACCGCGTTCGGGGGC 80279 >seq1086 Length=456340 Score = 102 bits (112), Expect = 1e-15 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 || ||||| || || ||||||||| | ||||| || | || ||||||||||| || ||| Sbjct 222419 GCTGCCAATTATCTTGACATCAAGGCGCTCCTTGACGTTGGCTGCAAGACCGTTGCAAAC 222478 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAG 2035757 | |||||||| ||||| |||||||| |||||||| || || |||||| || Sbjct 222479 ATGATCAAGGGAAAGTCTCCCGAGGAAATCCGCAAAACGTTCAACATCCAG 222529 >seq1499 Length=34637 Score = 86.0 bits (94), Expect = 1e-10 Identities = 101/136 (74%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 794348 CGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCC 794407 ||||| ||| | ||||||| |||| || |||||||| || || |||||||| |||| Sbjct 6011 CGCGA--GATGAGTTCGTTGGAAAAGGTCAGACCGGGCATCAGACCACGCTTCTTCAGCC 6068 Query 794408 AAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACGA 794467 | |||| | || ||| ||||| |||||||||||||| || ||||| |||| | Sbjct 6069 AGAAGACCGATGCAAATGAGCCAGAGAAGAAGATGCCCTCGACTGCAGCAAAAGCGACAA 6128 Query 794468 GCCGCTCGGCAAAAGT 794483 | || | ||||||||| Sbjct 6129 GTCGTTGGGCAAAAGT 6144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916070137352423