Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq1307 145 5e-30 seq59 91.5 1e-13 seq1609 86.0 4e-12 seq1188 82.4 5e-11 >seq1307 Length=69414 Score = 145 bits (160), Expect = 5e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34750 TCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGA 34809 |||||| | || | ||| |||| ||||| ||||||||||||||| ||||| |||||||| Sbjct 39106 TCCTCCACGCAGACGCAGCACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGA 39047 Query 34810 TAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGG 34869 || | ||| |||| ||||| || || || || |||||||| || || ||||| | || Sbjct 39046 CAGTGTCCGCCCATCCTCCAGCTGTTTGCCTGCAAAGATCAGGCGCTGTTGGTCCGGTGG 38987 Query 34870 CACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGAC 34929 | ||||||||||| | || || ||||| |||||| || | ||||| Sbjct 38986 GATACCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCTATCGTGTCTGACGATTCGAC 38927 Query 34930 ATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | || ||||||||||| || |||||||| |||||||||||||| Sbjct 38926 TTCCAGTGTGATGGTCTTTCCGGTCAGGGTCTTCACAAAGATCTGCAT 38879 Score = 82.4 bits (90), Expect = 5e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||||| ||| |||||||||||| || ||||| | | |||| | || Sbjct 38354 AGGACCAAGTGAAGAGTGGACTCCTTCTGAATATTGTAGTCGCTCAAGGTGCGACCGTCC 38295 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || |||||||| || ||||| || || || || || | || | || |||||||| Sbjct 38294 TCAAGCTGCTTTCCAGCAAAGATGAGACGCTGTTGATCCGGGGGAATTCCTTCCTTGTCC 38235 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | |||| || || ||| || |||| ||| |||||| Sbjct 38234 TGGATCTTGGCCTTGACGTTATCGATCGTGTCGGAGGACTCCACCTCAAGGGTGATGGTC 38175 Query 34946 TTTCCCGTGA 34955 || || |||| Sbjct 38174 TTGCCAGTGA 38165 >seq59 Length=11125 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 34750 TCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGA 34809 |||||| | ||| | | ||||||||| | ||| |||||| || || || ||||| || Sbjct 4372 TCCTCCGCGCAAGCGTAAGACCAGGTGGAGCGTGGACTCCTTTTGGATATTGTAGTCTGA 4313 Query 34810 TAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGG 34869 || |||| | || || || ||||| || ||||||||||| ||||||||||| | || Sbjct 4312 GAGAGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGTTGCTGGTCAGGTGG 4253 Query 34870 CACCCCCTCCTTGTCGTTTATTT 34892 | || |||||||| || |||| Sbjct 4252 GATTCCTTCCTTGTCTTTGATTT 4230 >seq1609 Length=13884 Score = 86.0 bits (94), Expect = 4e-12 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 34778 ATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTT 34837 ||| |||| |||| || |||||||| || | | | | | | || || || ||||| Sbjct 510 ATGCTGCTAACCTTTTGGATGTTATAATCGCTCAAGGTCCTCCCGTCCTCGAGCTGCTTG 451 Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897 || |||||||||| || |||||||| |||| | |||||||||||| | || || Sbjct 450 CCCGCGAAGATCAAGCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCC 391 Query 34898 TTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGT 34953 ||||| || | ||||| || || |||||| || | ||| |||||||| ||||| Sbjct 390 TTGAC--AT--TGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGT 335 Query 34954 GAGGGTCTTTACAAAG 34969 ||||| || || ||| Sbjct 334 CAGGGTTTTGACGAAG 319 >seq1188 Length=31586 Score = 82.4 bits (90), Expect = 5e-11 Identities = 137/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 34778 ATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTT 34837 ||| |||| ||||||| |||||||| || | | | | | | || || || ||||| Sbjct 1347 ATGCTGCTAACCTTCTGGATGTTATAATCGCTCAAGGTCCTCCCGTCCTCGAGCTGCTTG 1406 Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897 || |||||||||| || |||||||| |||| | |||||||||||| | || || Sbjct 1407 CCCGCGAAGATCAAGCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCC 1466 Query 34898 TTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGT 34953 ||||| || | ||||| || || ||||| || | || |||||||| ||||| Sbjct 1467 TTGAC--AT--TGTCGATGGTGTCGGAGGATTCGACCTCGAGAGTGATGGTCTTGCCCGT 1522 Query 34954 GAGGGTCTTTACAAAG 34969 ||||| || || ||| Sbjct 1523 CAGGGTTTTGACGAAG 1538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325686222735683