Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq40 145 7e-30 seq1609 125 7e-24 seq1188 120 3e-22 seq1307 118 1e-21 seq59 89.7 5e-13 >seq40 Length=17677 Score = 145 bits (160), Expect = 7e-30 Identities = 662/1043 (63%), Gaps = 30/1043 (3%) Strand=Plus/Plus Query 147951 GTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGAC 148010 ||||||||||||||||||||||| || | |||||| ||| || | |||| ||| Sbjct 1103 GTGCGCAGATAGTACATGCCCGTTTTCAAGCCCATCTTCCAGCCGGCGAAATGCATCGAT 1162 Query 148011 GACATG--AGCGTGTACGTCGGGTGCGGCACAAACAGATTAAACGACTGGCTCTGGTCAA 148068 | || | | | || |||| | || | || || |||||| || || | Sbjct 1163 GTTATCTTACCCATT--GTGGGGTCCTTCATGTGAATGTTCAAGGACTGGGATTGATCGA 1220 Query 148069 TGAACGCGCCACGGTCAGCGGCCATTT---CAATGAGTCGCTTTATCTTCATCTCCCAGG 148125 | || || || ||||| |||||||||| |||| | |||| | ||||||||| Sbjct 1221 TAAAGGCACCGCGGTCGGCGGCCATTTGCACAATCTGGCGCTGGCTG---ATCTCCCAGA 1277 Query 148126 CCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCGAGCCGC 148185 |||||||||| ||| |||||| | | |||| ||| | |||| ||| | || |||| Sbjct 1278 CCGTCTTGTAGAGCGACTTGATGTCAGCGGGGATGTTGGGGATGTTCTGGATGGATCCGC 1337 Query 148186 GGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCAGGTCAT 148245 || || | || | || ||| | ||||| | ||| | |||| || || | Sbjct 1338 CGTCGGCGATGATGCGGTTCTTCATGTTGTCCGACCAGAGGCCCATATCGACGAGATCCT 1397 Query 148246 CGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGT 148305 || ||| | |||| || |||||||| ||||| || ||||| || || ||| | | Sbjct 1398 TGAGCAGCCAAGGATTGACGACCTGAAATTCGCCCGCTAGCACACGACGGGAATATATAT 1457 Query 148306 TGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGG 148365 | || | ||||| || | || |||||||| | ||||| | |||| ||||||| Sbjct 1458 TCGAGGTGTAAGGTTCGAAGCATTCATTGTTGCCGAGGATCTGGGATGTCGAGGCCGTGG 1517 Query 148366 GCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAG 148425 ||||| || || || || || ||||| | |||| | || || ||| | || | Sbjct 1518 GCATGGGGGCCACGAGGAGGGAATTGCGAACACCGTGCTTGGCGATGTTGGACCGGAGCG 1577 Query 148426 CCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGC 148485 ||||||||||||| ||||| || ||| |||||| || | || || || || Sbjct 1578 TATCCCAGTCCCAGAGGTCGGACGGAGTGACGCCCCACATATCTTGTTGGAGGATCCCTT 1637 Query 148486 GGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGC 148545 || | ||| ||| ||||| | | ||| || ||| | | || | ||||| Sbjct 1638 GGGAGACAGGGGAGCCTTCGTAGGTGGAGTATGGGCCGAGTTCTTTGGCGATCTCGCAAG 1697 Query 148546 TCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGC---GCCG 148602 || ||| || ||| ||| || || || ||| ||| |||| ||| || || Sbjct 1698 ATGCGGTGAGGCCGGCGTGGTAGATGGTTTCAAAAATCTGCTTGTTCAGCTGCCTTGCTT 1757 Query 148603 CCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGC 148662 ||| | | ||| ||||||| || || | || || |||||||| || ||||| | Sbjct 1758 CCGGCGAG---TCGAACGGCATTCGGAGGGCGAGGAATGCATCGGCAAGTCCTTGTACCC 1814 Query 148663 CCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGCGGATAGTGGT 148722 | | || | || || || | ||| || || | ||||||| || Sbjct 1815 CAAGACCGACCGGTCGATGGCGGAAATTGCTCCTCTTGGCTTCTTCTACAGGATAGTAGT 1874 Query 148723 TGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAATT 148782 || |||||||| |||| || || | ||||||| || | | | || Sbjct 1875 TGACCTCGATGATTTTGTTCAGGTTTCTTGTCACCACCCGGGTGACCTCGTGTAGTTTGG 1934 Query 148783 CAAAATCGTACTTGTCATCTACGA--TGCATC------GGTT--CACGGCGATAGAGGCT 148832 |||| ||||||| || |||| |||||| |||| | ||| | || || Sbjct 1935 CAAAGTCGTACT----CTCCACGAGCTGCATCTACGAAGGTTGGGAGGGCAAGGGAAGCC 1990 Query 148833 AGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTG 148892 |||||||| || || |||||| || ||| |||| || | ||||| | ||||| ||| Sbjct 1991 AGATTGCAGACTGCAACCTCATCAGGCGCGGTGTATTCGATAATCTCCGTGCACAAGTTG 2050 Query 148893 CTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTAC 148952 || ||| |||| |||||| || |||||||||| |||| || |||||||| Sbjct 2051 GAGCTACGGATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAT 2110 Query 148953 AGCATGTACGGTCCGCCAGTTTC 148975 |||||| |||| |||||| || Sbjct 2111 AGCATGAACGGGTTGCCAGTCTC 2133 >seq1609 Length=13884 Score = 125 bits (138), Expect = 7e-24 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 133473 TTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCCGCGTAAATG 133532 || || || || ||||||| || || | |||||||||||||||||||||| | || Sbjct 498 TTTTGGATGTTATAATCGCTCAAGGTCCTCCCGTCCTCGAGCTGCTTGCCCGCGAAGATC 439 Query 133533 AGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCA 133592 | ||||||||||| || ||||| || |||||||| |||||| ||||| | || Sbjct 438 AAGCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCG 379 Query 133593 ACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAA 133651 | ||||||| || ||| || |||| ||||| ||| ||||| ||||| ||||| ||||| Sbjct 378 ATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTTTTGACGAA 320 >seq1188 Length=31586 Score = 120 bits (132), Expect = 3e-22 Identities = 134/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 133473 TTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCCGCGTAAATG 133532 ||||| || || ||||||| || || | |||||||||||||||||||||| | || Sbjct 1359 TTCTGGATGTTATAATCGCTCAAGGTCCTCCCGTCCTCGAGCTGCTTGCCCGCGAAGATC 1418 Query 133533 AGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCA 133592 | ||||||||||| || ||||| || |||||||| |||||| ||||| | || Sbjct 1419 AAGCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCG 1478 Query 133593 ACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAA 133651 | ||||||| || || || |||| |||| ||| ||||| ||||| ||||| ||||| Sbjct 1479 ATGGTGTCGGAGGATTCGACCTCGAGAGTGATGGTCTTGCCCGTCAGGGTTTTGACGAA 1537 >seq1307 Length=69414 Score = 118 bits (130), Expect = 1e-21 Identities = 132/174 (76%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| |||||||| |||| || ||| ||| |||||| |||||||| || Sbjct 38339 GTGGACTCCTTCTGAATATTGTAGTCGCTCAAGGTGCGACC-GTCCTCAAGCTGCTTTCC 38281 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||| ||||| || || || || || ||||||||||| |||||| ||| Sbjct 38280 AGCAAAGATGAGACGCTGTTGATCCGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTT 38221 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 || | || | |||||||| || |||||| || | ||||| ||| ||||| || Sbjct 38220 GACGTTATCGATCGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCAGT 38167 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||| |||||||||||||| ||| | ||||| ||||| || ||||||||||| || || || Sbjct 38578 GTCTTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGTTGATCGGGAGGGATACCCTCTTT 38519 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| ||||| ||| | | || | ||||| | | |||||| || | ||| | Sbjct 38518 GTCCTGAATCTTGGCCTTTACATTGTCGATGGTGTCCGAAGACTCCACCTCCAGGGTAAT 38459 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGA 133650 ||| ||||| ||||| || || |||| Sbjct 38458 GGTCTTGCCAGTCAGGGTCTTGACGA 38433 Score = 86.0 bits (94), Expect = 6e-12 Identities = 144/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||||| |||||| |||||||| || ||||| ||| | ||| | | | || || | | Sbjct 38854 ATGTAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGTGTGCGGCCA-TCTTCTAATT 38796 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 | ||||| ||| | || | ||||| ||||| || ||||||||||| || || |||| Sbjct 38795 GTTTGCCGGCGAAGATCAAGCGCTGTTGGTCCGGGGGGATGCCTTCTTTATCTTGTATCT 38736 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | || | ||||| | | || || |||| |||| ||| ||||| | Sbjct 38735 TGGCCTTGACATTGTCGATTGTGTCTGAAGATTCTACTTCGAGAGTGATGGTCTTGCCTG 38676 Query 133636 TCAGAGTTTTTACGAAAATCTGCATG 133661 ||| || || ||||| || |||||| Sbjct 38675 TCAAGGTCTTGACGAAGATTTGCATG 38650 >seq59 Length=11125 Score = 89.7 bits (98), Expect = 5e-13 Identities = 88/111 (79%), Gaps = 2/111 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| || || |||||||| || | ||| ||| |||||||||||||||||| Sbjct 4341 GTGGACTCCTTTTGGATATTGTAGTCTGAGAGAGTGCGACC-GTCCTCGAGCTGCTTGCC 4283 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||| | || || || |||||||| || ||||| ||||||||||| |||| Sbjct 4282 CGCGAAGATCAGGCGTTGCTGGTCAGGTGGGATTCCTTCCTTGTCTTTGAT 4232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483410787146680