Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1307 107 1e-18 >seq1307 Length=69414 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | || | |||||| ||| ||||| || |||||||| |||||| Sbjct 38877 CCACCGCGCAGACGGAGGACGAGATGTAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAG 38818 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 |||||||| | || || |||||||| ||||| || ||||| ||||| || || | || Sbjct 38817 AGTGTGCGGCCATCTTCTAATTGTTTGCCGGCGAAGATCAAGCGCTGTTGGTCCGGGGGG 38758 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||| || || || | | |||| ||| | ||||| ||||| || Sbjct 38757 ATGCCTTCTTTATCTTGTATCTT-GGCCTTGACATTGTCGATTGTGTCTGAAGATTCTAC 38699 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || ||||| || || || || ||||| ||||| Sbjct 38698 TTCGAGAGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATTTGCAT 38651 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || | || ||| | |||||| || || |||||||| || || |||||||| || || Sbjct 39105 CCTCCACGCAGACGCAGCACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAC 39046 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| || | || |||| ||||| || ||||| |||| ||||| || || | || Sbjct 39045 AGTGTCCGCCCATCCTCCAGCTGTTTGCCTGCAAAGATCAGGCGCTGTTGGTCCGGTGGG 38986 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||| || ||||| || ||| || | ||| ||| | ||||| ||||| || Sbjct 38985 ATACCCTCCTTGTCCTGGATCTTCGCCTTGA-CATTGTCTATCGTGTCTGACGATTCGAC 38927 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || |||||||||||||| Sbjct 38926 TTCCAGTGTGATGGTCTTTCCGGTCAGGGTCTTCACAAAGATCTGCAT 38879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328697361925440