Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq40 116 4e-21 seq1499 84.2 2e-11 >seq40 Length=17677 Score = 116 bits (128), Expect = 4e-21 Identities = 343/528 (65%), Gaps = 3/528 (1%) Strand=Plus/Plus Query 147884 AGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTT---CCGC 147940 ||| |||||| ||||| || || | ||| | ||| | || || |||||| || | Sbjct 2456 AGACGTCGGCATGCCATGGCTCGAGGTACATGGCGAAAGCTCCGGGACGCTTGTTGCCTC 2515 Query 147941 CCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCG 148000 | || ||||||| ||| | ||||||| || ||||| | ||| || | | ||| | | Sbjct 2516 CTTGATCGACATAGCGGGCGGTGTTGTTGAAGACGCGTAGCATAGGAACAATGCCATTGG 2575 Query 148001 CAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGC 148060 | ||| |||||| ||| | ||| || || | ||| | ||| | || Sbjct 2576 AGGAGCCATTGGTGCCCCCGATATACGAGCCTGTAGCGCGAATGCGGTGGATGTTCAGGC 2635 Query 148061 CAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGT 148120 ||||||| ||| | ||| || ||| ||| || | || ||||||||||| Sbjct 2636 CAATGCCACCGGCAGTCTTCGAGATGAGAGCACACGTTTTGAGGGTGTCGTAGATGCCGT 2695 Query 148121 CGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTC 148180 |||| || || | || | | | | ||| || || || |||| || || | || | Sbjct 2696 CGATACTATCCTCCTTCATGTCGATCAAGAAGCATGAGGACATCTGAGGCTGTGGGGTGC 2755 Query 148181 CCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACG 148240 | || ||| | ||| || |||||| || || |||| ||| ||| | | || | Sbjct 2756 CAGCATTGAACAAGGTAGGGGACGCGTGGGTGAAGTATTTCTGAGACATGAGATGGTAGG 2815 Query 148241 TCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGT 148300 |||| || | | ||||||| |||| |||| || |||| ||||| ||||| | ||||| Sbjct 2816 TCTCGATGACCTTGTCGATGTTGTCGTCGTGTATACCCACAGCGACACGCATAATCATGT 2875 Query 148301 GCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTT 148360 ||||||| || ||||| |||| ||| | ||| || ||| ||||| || | Sbjct 2876 GCTGTGGACGCTCGGCCACTTTGCCATTGGTGCGGAGGAGGTATGATCGCTCGAGAGTCT 2935 Query 148361 TGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCG 148408 || | |||||||| | ||| | || ||| | ||||| ||||||||| Sbjct 2936 TGAACCCAAAGTATTGGTAGTTGAAGTCTCGGTCGTAGACGATGGCCG 2983 >seq1499 Length=34637 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 47046 GAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCC-GTCGCCTTGCTGGG 47104 || || || |||||||| |||| ||||| || | ||| | ||| || | || |||| Sbjct 5919 GAAGCTGTCAGCATCGAGCAGGAATTTTTGACGGAGGCTTTACCCTGTGGTCTAT-TGGG 5861 Query 47105 CATGAACGCACAGTCTATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCA 47164 |||||||||| | ||| |||| || || || ||||| || || ||| || | | Sbjct 5860 CATGAACGCAAACCTCATGAAGCAATACATCGAATTCGTGGCCGACCGACTGCTGCT-CG 5802 Query 47165 GCTCGGACAACCGAAA-TATTTTAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTT 47223 || || || | ||| |||| || || ||||||||||| || ||| | ||| | Sbjct 5801 CCTTGGGTAATCAAAAGTATTACAAAGCGACGAATCCGTTTGACTTCATGGAGTCCATCT 5742 Query 47224 CGCTCGAGGGCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGTAT 47270 | || | |||||| |||||||| || |||||||| || || || ||| Sbjct 5741 CTCTGGCGGGCAAGACCAATTTCTTTGAGAAACGCGTTGGTGATTAT 5695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476601328190520