Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1499 149 9e-30 seq331 86.0 9e-11 >seq1499 Length=34637 Score = 149 bits (164), Expect = 9e-30 Identities = 216/302 (72%), Gaps = 5/302 (2%) Strand=Plus/Minus Query 1455769 CCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGG 1455828 ||| | ||||||| | |||||| || ||||||||||||||||| ||||| || || ||| Sbjct 6599 CCATCAGATATGGCAGATGTAC-AAGAAGGCCGAGGCCTCCTTCTGGACTGCAGAAGAGA 6541 Query 1455829 TCGACCTCGGCGCCGACACGGTCCACTGGGTGTCG---CTGAGCGACGACGAGCGCCATT 1455885 | |||||| | ||| | ||||| || | |||||| ||||| | | Sbjct 6540 TTGACCTCTCCAAGGACCTTCACGACTGGAACAACAGACTCAACGACGATGAGCGTTACT 6481 Query 1455886 TCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTG 1455945 ||||| ||||||| | || || || |||||| |||||||| || ||||||||| Sbjct 6480 TCATCTCGCACGTCTTGGCATTCTT-CGCCGCATCTGATGGCATTGTCAACGAGAACCTC 6422 Query 1455946 GCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAG 1456005 | | ||||| | ||||| ||| | || ||||| || | || ||||| ||||| Sbjct 6421 GTTGAGCGCTTCAGTGGTGAGGTGCAAATCCCCGAGGCTCGCTGCTTCTACGGCTTCCAA 6362 Query 1456006 ATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAG 1456065 ||| || || ||||| || || ||||| |||||||| ||||||||||||||| ||||| Sbjct 6361 ATCATGATGGAGAACATTCATTCRGAAACATACTCGCTTCTGATCGACACCTACATCAAG 6302 Query 1456066 GA 1456067 || Sbjct 6301 GA 6300 Score = 86.0 bits (94), Expect = 9e-11 Identities = 137/188 (73%), Gaps = 14/188 (7%) Strand=Plus/Minus Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGAT---CAACAAGGAGGGCCTCGACACTTTGCCG 1456179 || |||||||||||||| || ||||| | ||||| | ||| || |||||| Sbjct 6189 AAGAAGGCCGACTGGGCTCTGCGATGGATAGCCGACAAGAA----CTCAACT-TTTGCCC 6135 Query 1456180 AGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCA 1456238 | || || |||| ||||| || |||||||||||||| ||||| ||| || ||| | Sbjct 6134 AACGACTTGTCGCTTTTGCTGCAGTCGAGGGCATCTTCTTCTCTGGCTCATT-TGCATCG 6076 Query 1456239 -TCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTAT 1456297 |||| ||||| |||||||| || || |||||||||| | |||| ||||||| | || Sbjct 6075 GTCTTCTGGCTGAAGAAGCGTGGTCTGATGCCCGGTC-TGACCTTTTCCAACGAACTCAT 6017 Query 1456298 CAGTCGCG 1456305 | ||||| Sbjct 6016 C--TCGCG 6011 >seq331 Length=328426 Score = 86.0 bits (94), Expect = 9e-11 Identities = 128/176 (73%), Gaps = 7/176 (4%) Strand=Plus/Minus Query 1600576 CTCCATCATCTTGCCCATGGTCATGCGCGACGGGATGGCGTGCGGGTTGATCACAATGTC 1600635 ||| | ||| || || | |||||||||||||||| | |||||||||| || | ||||| Sbjct 80216 CTCGAGCATTTTCCCAACCGTCATGCGCGACGGGAAGCCGTGCGGGTTCATGATGATGTC 80157 Query 1600636 GGGCGTGGCACCGCCGCGAGGCGACCAGGGCATGTC--CTCGGTGGAGCGCACGCTGCCC 1600693 ||| |||| | || || |||||||||| || | | | || |||| |||| Sbjct 80156 GGGGACCATCCCGCTGTC-GGAGA--AGGGCATGTCGACTTGTTCG-GC-CACGAGGCCC 80102 Query 1600694 ACGGTGCCCTTTTGGCCGTGGCGCGACGACAGTTTGTCGCCCACCTCGGGCTGGCG 1600749 || |||||||||||||||||| || || | ||||||||| | ||| || |||| Sbjct 80101 ACCACGCCCTTTTGGCCGTGGCGGGAGGAGAATTTGTCGCCGATCTCCGGGCGGCG 80046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177651379304434