Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq1307 138 1e-27 seq40 82.4 8e-11 >seq1307 Length=69414 Score = 138 bits (152), Expect = 1e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 ||||| ||||| |||||||| || || |||||||||||| | ||| | || || Sbjct 38859 ACGAGATGTAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGTGTGCGGCCATCTTCT 38800 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 | |||||||| || || ||||| ||||| || || || || ||||||||||| ||||| Sbjct 38799 AATTGTTTGCCGGCGAAGATCAAGCGCTGTTGGTCCGGGGGGATGCCTTCTTTATCTTGT 38740 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| ||| | |||||| || ||||| || |||||||| ||||| || Sbjct 38739 ATCTTGGCCTTGACATTGTCGATTGTGTCTGAAGATTCTACTTCGAGAGTGATGGTCTTG 38680 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || ||||| |||||||| Sbjct 38679 CCTGTCAAGGTCTTGACGAAGATTTGCAT 38651 Score = 116 bits (128), Expect = 4e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||||| || || |||||||||||||| |||||||||||| Sbjct 38649 CCACCACGGAGACGGAGGACGAGATGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAG 38590 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | ||| |||||||| ||||| || || || | |||||| |||||||| || Sbjct 38589 AGAGTACGGCCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGTTGATCGGGAGGG 38530 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || ||||| || ||||| || || || ||| | ||||| || || ||||| Sbjct 38529 ATACCCTCTTTGTCCTGAATCTTGGCCTTTACATTGTCGATGGTGTCCGAAGACTCCACC 38470 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 || || |||||||| || || || | || || |||| Sbjct 38469 TCCAGGGTAATGGTCTTGCCAGTCAGGGTCTTGACGA 38433 Score = 111 bits (122), Expect = 2e-19 Identities = 166/234 (71%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 134483 CTTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC 134542 || |||||| | || |||| ||| | ||| || ||| ||||| || ||||||||||| Sbjct 39109 CTGTCCTCCACGCAGACGCAGCACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTC 39050 Query 134543 GCCAACGGTGTGAGAG--TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCG 134600 | || |||| | || || ||||||||||||||||| |||| ||||| || || Sbjct 39049 --CGACAGTGTCCGCCCATCCTCCAGCTGTTTGCCTGCAAAGATCAGGCGCTGTTGGTCC 38992 Query 134601 GGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGAT 134660 || || || || || || || || || || ||||| ||| | ||||| |||||| Sbjct 38991 GGTGGGATACCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCTATCGTGTCTGACGAT 38932 Query 134661 TCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || || || || ||||| || ||||| | || || || || || |||||| Sbjct 38931 TCGACTTCCAGTGTGATGGTCTTTCCGGTCAGGGTCTTCACAAAGATCTGCATT 38878 >seq40 Length=17677 Score = 82.4 bits (90), Expect = 8e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 || |||||| | |||| || || ||||| || |||| ||| |||| ||| | | | Sbjct 2879 CAGCACATGATTATGCGTGTCGCTGTGGGTATACACGACGACAACATCGACAAGGTCATC 2820 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683 || || ||||| | |||||| |||| | || || ||||| || || ||| |||| Sbjct 2819 GAGACCTACCATCTCATGTCTCAGAAATACTTCACCCACGCGTCCCCTACCTTGTTCAAT 2760 Query 7684 GCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGC 7743 || ||||| |||||| ||||||| || || ||| | |||| || || || Sbjct 2759 GCTGGCACCCCACAGCCTCAGATGTCCTCATGCTTCTTGATCGACATGAAGGAGGATAGT 2700 Query 7744 ATCGACGGCATTTACAACACGCT 7766 ||||||||||| ||| |||| || Sbjct 2699 ATCGACGGCATCTACGACACCCT 2677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505387931935640