Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq40 167 3e-36 seq1499 149 9e-31 >seq40 Length=17677 Score = 167 bits (184), Expect = 3e-36 Identities = 599/934 (64%), Gaps = 16/934 (2%) Strand=Plus/Plus Query 69517 tCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576 ||||| || || || ||| ||| | | || ||| || || || |||||||| | | Sbjct 2278 TCGAACTCGTCCCCATAAATATCTGCAAGACCCGGAGCCTCGTTAGGGCACATCAAAGTC 2337 Query 69577 CACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAG 69636 ||| || ||| | | ||||| ||||| || ||||| || |||||||| || | || Sbjct 2338 CACTCACCATTGGCTTCGACTCGCTTCATGAAGAGATCCGGGATCCAAAGGGCAAAGAAT 2397 Query 69637 AGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATA 69696 ||||||| | | |||||| || || ||| || | ||| || || || | Sbjct 2398 AGATCTCGAGCGCGGACTTCTTCCTTGCCGTGATTCTTCCGCAAATCCAGGAATTCAAAG 2457 Query 69697 ATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCC 69756 | || | ||||||||| || || || || || | |||| || || || || ||||| Sbjct 2458 ACGTCGGCATGCCATGGCTCGAGGTACATGGCGAAAGCTCCGGGACGCTTGTTGCCTCCT 2517 Query 69757 TGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGAT 69816 ||||| | || | ||| ||||| || |||| | ||||| |||| ||| ||||| || Sbjct 2518 TGATCGACATAGCGGGCGGTGTTGTTGAAGACGCGTAGCATAGGAACAATGCCATTGGAG 2577 Query 69817 TTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCT 69876 ||||| || || ||||| ||| | |||||||| || || || Sbjct 2578 GAGCCATTGGTGCCCCCGATATACGAGCCTGTAGCGCGAATGCGGTGGATGTTCAGGCCA 2637 Query 69877 ATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCT 69936 || || || || | || ||||| |||||||| ||| | ||||| || || || || Sbjct 2638 ATGCCACCGGCAGTCTTCGAGATGAGAGCACACGTTTTGAGGGTGTCGTAGATGCCGTCG 2697 Query 69937 ATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCC 69996 || ||||| || |||||| | | || || ||||| ||| | ||| || || Sbjct 2698 ATACTATCCTCCTTCATGTCGATCAAGAAGCATGAGGACATCTGAGGCTGTGGGGTGCCA 2757 Query 69997 GCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTT 70056 ||||| || || ||||| || ||||| ||||| |||| | ||| | |||| ||| || Sbjct 2758 GCATTGAACAAGGTAGGGGACGCGTGGGTGAAGTATTTCTGAGACATGAGATGGTAGGTC 2817 Query 70057 TCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGC 70116 || || | || || | | || || || | ||||||||||| | ||| ||| Sbjct 2818 TCGATGACCTTGTCGATGTTGTCGTCGTGTATACCCACAGCGACACGCATAATCATGTGC 2877 Query 70117 TGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTA 70176 || || || || || ||| ||| | | ||||||||| || ||||| || Sbjct 2878 TGTGGACGCTCGGCCACTTTGCCATTGGTGCGGAGGAGGTATGATCGCTCGAGAGTCTTG 2937 Query 70177 AACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTTTATCC 70236 |||||||| || | ||| ||||||| ||||| | || | || || || | || Sbjct 2938 AACCCAAAGTATTGGTAGTTGAAGTCTCGGTCGTAGACGATGGCCGAGTTGAGCTCTTCG 2997 Query 70237 TTATATTTGGTAACTATATCCATAACAGTAGG-----TGAGATA--ATCGGAGATCGTTT 70289 | || | || | || ||||| ||||||| || || | | | || Sbjct 2998 GCGTGCTTCATGACGGTCTC-------GTAGGTCTTTTGAGATATCATGGGGGCTAGCTT 3050 Query 70290 ACCATTTTTAGGATTAACATAGTTGAATAAATCTTCCATTACATCACTAAATAGtttttt 70349 || ||||| || | |||| | ||| ||| || || ||| |||| |||| || Sbjct 3051 GTTGTTCTTAGGGTTGATGTAGTGGTATAGATCGTCGATGACAGAGGAAAATTGTTTCTT 3110 Query 70350 tGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCAGGATG 70409 || | |||||| | || || | || || | ||||| || || |||||||| ||||| Sbjct 3111 GGTCTGCTTGTGGAGGTTGGAAACAGCAATGCGTGCTGCAAGGATGGCATAGTCGGGATG 3170 Query 70410 TTGTGTAGTACAAGTA-GCTGCTATTTCCGCAGC 70442 ||| | || ||| |||||| |||| || || Sbjct 3171 -GGTGACGGTCATGTACGCTGCTGTTTCGGCGGC 3203 >seq1499 Length=34637 Score = 149 bits (164), Expect = 9e-31 Identities = 301/444 (68%), Gaps = 2/444 (0%) Strand=Plus/Plus Query 39325 TTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 39384 |||||| || ||||||||||||||||| || ||||| || ||||| ||| || || Sbjct 5689 TTTTTGATAATCACCAACGCGTTTCTCAAAGAAATTGGTCTTGCCCGCCAGAGAGATGGA 5748 Query 39385 TTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAAT 39444 |||||||| ||||||||||| || || || || | |||| | || || | | Sbjct 5749 CTCCATGAAGTCAAACGGATTCGTCGCTTTGTAATACTTTTGATTACCCAAGGCGAGCAG 5808 Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAG 39504 || || || || || ||||| |||||| ||||| | | ||||| || | || Sbjct 5809 CAGTCGGTCGGCCACGAATTCGATGTATTGCTTCATGAGGTTTGCGTTCATGCCCAATAG 5868 Query 39505 TTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTAT 39564 | |||| ||||||||| | ||| || | |||||| || || || || || | Sbjct 5869 ACCACAGGGTAAAGCCTCCGTCAAAAATTCCTGCTCGATGCTGACAGCTTCGGTGATGA- 5927 Query 39565 CGATGTT-ACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGA 39623 || | || ||| ||| || | ||| || ||| |||| | || || | Sbjct 5928 CGTCCTGCACGGCCTGCGGACTGGGGCGGTGCTTTAGGTGTGAGAACAGGAGACAAGCAA 5987 Query 39624 AGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCA 39683 ||||| || | |||||||| | || | |||||| ||||| || || || |||| Sbjct 5988 AGTCAGTGTGCATTCCCTCATCCCGCGAGATGAGTTCGTTGGAAAAGGTCAGACCGGGCA 6047 Query 39684 TTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTT 39743 | ||||||||||| || ||||| || | | ||||| || ||||| ||||||||||| | Sbjct 6048 TCAGACCACGCTTCTTCAGCCAGAAGACCGATGCAAATGAGCCAGAGAAGAAGATGCCCT 6107 Query 39744 CTACTGCTGCAAATGCAACAAGTC 39767 | ||||| ||||| || ||||||| Sbjct 6108 CGACTGCAGCAAAAGCGACAAGTC 6131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686894572401480