Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1307 100 2e-16 seq1188 86.0 5e-12 seq1609 82.4 6e-11 >seq1307 Length=69414 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| || | || | ||||| || | || || || || |||||||||||||||| Sbjct 38371 TGCCTCCACGAAGACGGAGGACCAAGTGAAGAGTGGACTCCTTCTGAATATTGTAGTCGC 38312 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 ||| | |||| |||| || ||||| || || || | |||||||||||||||||||| | Sbjct 38311 TCAAGGTGCGACCGTCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGTTGATCCGGGG 38252 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || ||||||| || | | | || | ||||| | || || | Sbjct 38251 GAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTATCGATCGTGTCGGAGGACTCCA 38192 Query 27199 CTTCTAGAGTTATAGATTTGCCCGT 27223 | || || || || | ||||| || Sbjct 38191 CCTCAAGGGTGATGGTCTTGCCAGT 38167 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||||| || | || | ||||| || || ||||| || || ||||||||| Sbjct 38877 CCACCGCGCAGACGGAGGACGAGATGTAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAG 38818 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | ||||| | ||||| |||||| | || | |||||||| ||||| || Sbjct 38817 AGTGTGCGGCCATCTTCTAATTGTTTGCCGGCGAAGATCAAGCGCTGTTGGTCCGGGGGG 38758 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || |||||||| |||||| || | | || | ||||||| | ||| ||| Sbjct 38757 ATGCCTTCTTTATCTTGTATCTTGGCCTTGACATTGTCGATTGTGTCTGAAGATTCTACT 38698 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| || | ||||| |||| || || || ||||||||||| Sbjct 38697 TCGAGAGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATTTGCAT 38651 Score = 95.1 bits (104), Expect = 1e-14 Identities = 164/237 (69%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 27012 TAATTATTG-CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATT 27070 || ||| || ||||| |||| |||| ||||| || | || || || || || || Sbjct 39115 TATTTACTGTCCTCCACGCAGACGCAGCACCAAGTGAAGGGTGCTCTCCTTCTGGATGTT 39056 Query 27071 GTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTG 27130 |||||| || | ||| | || || |||||||| || || | || || |||||||| Sbjct 39055 GTAGTCCGACAGTGTCCGCCCATCCTCCAGCTGTTTGCCTGCAAAGATCAGGCGCTGTTG 38996 Query 27131 ATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGT 27190 ||||| || | |||||| || || |||||| || | | |||| ||||||| Sbjct 38995 GTCCGGTGGGATACCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCTATCGTGTCTGA 38936 Query 27191 GGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||| ||||| || || || | || || ||||| || ||||||||||| ||||| Sbjct 38935 CGATTCGACTTCCAGTGTGATGGTCTTTCCGGTCAGGGTCTTCACAAAGATCTGCAT 38879 Score = 86.0 bits (94), Expect = 5e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || ||||| || ||||||||| | | || ||||||||||||| || ||| Sbjct 38619 GTGGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCTTCGAGCTGCTTGCCG 38560 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||||||||| || || | ||||||||| || |||||| || Sbjct 38559 GCGAAGATGAGACGCTGTTGATCGGGAGGGATACCCTCTTTGTCCTGAATCTTGGCCTTT 38500 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | | || || || || || || | ||||| ||||| || Sbjct 38499 ACATTGTCGATGGTGTCCGAAGACTCCACCTCCAGGGTAATGGTCTTGCCAGTCAGGGTC 38440 Query 27231 TTCAC 27235 || || Sbjct 38439 TTGAC 38435 >seq1188 Length=31586 Score = 86.0 bits (94), Expect = 5e-12 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 27060 TTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATG 27119 || || || || || ||||||| | | | | |||| |||||||| || || ||| | || Sbjct 1359 TTCTGGATGTTATAATCGCTCAAGGTCCTCCCGTCCTCGAGCTGCTTGCCCGCGAAGATC 1418 Query 27120 AGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCT 27179 | ||||| || |||||||| | ||||| || || ||||||| || | | || Sbjct 1419 AAGCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCG 1478 Query 27180 ACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAG 27239 | ||||| | || ||| || || ||||| || | ||||||||||| ||||| || ||| Sbjct 1479 ATGGTGTCGGAGGATTCGACCTCGAGAGTGATGGTCTTGCCCGTCAGGGTTTTGACGAAG 1538 >seq1609 Length=13884 Score = 82.4 bits (90), Expect = 6e-11 Identities = 126/180 (70%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 27060 TTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATG 27119 ||||| || || || ||||||| | | | | |||| |||||||| || || ||| | || Sbjct 498 TTTTGGATGTTATAATCGCTCAAGGTCCTCCCGTCCTCGAGCTGCTTGCCCGCGAAGATC 439 Query 27120 AGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCT 27179 | ||||| || |||||||| | ||||| || || ||||||| || | | || Sbjct 438 AAGCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCG 379 Query 27180 ACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAG 27239 | ||||| | || || || || || || || | ||||||||||| ||||| || ||| Sbjct 378 ATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTTTTGACGAAG 319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424925818582584