Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq1499 100 9e-16 seq40 93.3 1e-13 >seq1499 Length=34637 Score = 100 bits (110), Expect = 9e-16 Identities = 134/184 (73%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 443685 CGAGAAAATCTCAGCTTC-GTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTT 443743 ||| || | |||| ||| | | | ||||| ||||||||||||| ||||| || | || Sbjct 6157 CGACAAGAACTCAACTTTTGCCCAACGACTTGTCGCTTTTGCTGCAGTCGAGGGCATCTT 6098 Query 443744 GTTTAGCGGCAGCTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTC 443803 || ||| ||| || || |||||||| |||| |||||||| || |||| ||||| Sbjct 6097 CTTCTCTGGCTCATTT-GCATCGGTCTTCTGGCTGAAGAAGCGTGGTCTGATGCCCGGTC 6039 Query 443804 TGACCTTTAGTAACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTC 443863 |||||||| |||||||| ||| ||||| ||||| |||| ||||| || |||| Sbjct 6038 TGACCTTTTCCAACGAACTCATCTCGCGGGATGAGGGAATGCACACTGACTTTGCTTGTC 5979 Query 443864 TTCT 443867 | || Sbjct 5978 TCCT 5975 >seq40 Length=17677 Score = 93.3 bits (102), Expect = 1e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 254972 GGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGC 255031 |||||| | || ||| | || || ||||||||| || ||||| ||||||||||| ||| Sbjct 2570 GGCATTGTTCCTATGCTACGCGTCTTCAACAACACCGCCCGCTATGTCGATCAAGGAGGC 2511 Query 255032 GGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGAC 255082 ||| || || ||||| ||| |||| ||||| ||||| ||||| |||||| Sbjct 2510 AACAAGCGTCCCGGAGCTTTCGCCATGTACCTCGAGCCATGGCATGCCGAC 2460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588302279130365