Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq40 165 1e-35 seq1499 86.0 8e-12 >seq40 Length=17677 Score = 165 bits (182), Expect = 1e-35 Identities = 391/584 (67%), Gaps = 15/584 (3%) Strand=Plus/Plus Query 111509 AGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTC 111568 ||||| || |||| || || || | | || ||| | |||| | || || |||||| Sbjct 2305 AGACCCGGAGCCTCGTTAGGGCACATCAAAGTCCACTCACCATTGGCTTCGACTCGCTTC 2364 Query 111569 ATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCA 111628 ||||| || || || ||||| |||| | || ||||||| | || | ||||| | Sbjct 2365 ATGAAGAGATCCGGGATCCAAAGGGCAAAGAATAGATCTCGAGCGCGGACTTCTTCCTTG 2424 Query 111629 CCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAG 111688 || || || || || || ||||| || | || || || ||||||||||| || || Sbjct 2425 CCGTGATTCTTCCGCAAATCCAGGAATTCAAAGACGTCGGCATGCCATGGCTCGAGGTAC 2484 Query 111689 ACTGCGATAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCG 111742 | |||| || ||| ||||| || |||||| |||||||| || ||| | Sbjct 2485 ATGGCGAAAGCTCCGG---GACGCTTGTTGCCTCCTTGATCGACATAGCGGGCGGTGTTG 2541 Query 111743 TTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGT-CCCCCGA-ATAC 111800 || || ||||| ||||| |||| ||| |||| || ||||| || ||||||| |||| Sbjct 2542 TTGAAGACGCGTAGCATAGGAACAATGCCATTGGAGGAGCCATTGGTGCCCCCGATATAC 2601 Query 111801 GAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGA 111860 ||| | | || | | ||||||| || ||||| || || || ||| |||| Sbjct 2602 GAGCCTG--TAGCGCGAATGCGGTGGATGTTCAGGCCAATGCCACCGGCAGTCTTCGAGA 2659 Query 111861 TTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGA 111920 | | |||||| | || || | ||||| |||| ||| |||||||| || ||| Sbjct 2660 TGAGAGCACACGTTTTGAGGGTGTCGTAGATGCCGTCGATACTATCCTCCTTCATGTCGA 2719 Query 111921 TAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTG 111980 | | |||||| ||||||||| || ||| || ||||||||||| | ||| || | | Sbjct 2720 TCAAGAAGCATGAGGACATCTGAGGCTGTGGGGTGCCAGCATTGAACAAGGTAGGGGACG 2779 Query 111981 CGTGAATGAA-CATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCT 112039 |||| |||| || | || ||||| | ||| ||||| | ||| || |||| Sbjct 2780 CGTGGGTGAAGTATTTC-TGAGACATGAGATGGTAGGTCTCGATGACCTTGTCGATGTTG 2838 Query 112040 TCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 || |||| || || | ||||| ||||| | ||||| |||||| Sbjct 2839 TCGTCGTGTATACCCACAGCGACACGCATAATCATGTGCTGTGG 2882 Score = 84.2 bits (92), Expect = 3e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 111228 TTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTA 111287 |||| ||||| | || |||| |||||| || || |||||| | ||||| || | Sbjct 1971 TTGGGAGGGCAAGGGAAGCCAGATTGCAGACTGCAACCTCATCAGGCGCGGTGTATTCGA 2030 Query 111288 AAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCT 111347 ||| || || || |||||||| || || || |||| ||||| ||||| ||||| Sbjct 2031 TAATCTCCGTGCACAAGTTGGAGCTACGGATGGTACCCAGGTTCTTCTGGTTGCTCTTGC 2090 Query 111348 TGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 111396 |||| ||||||||||| |||||| | || | || ||||| ||||| Sbjct 2091 GGTTGGCGGCATCCTTGTATAGCATGAACGGGTTGCCAGTCTCGGTCTG 2139 >seq1499 Length=34637 Score = 86.0 bits (94), Expect = 8e-12 Identities = 116/159 (73%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| | |||||||| || || || ||||| || || ||| ||||| Sbjct 5984 GCAAAGTCAGTGTGCATTCCCTCATCCCGCGAGATGAGTTCGTTGGAAAAGGTCAGACCG 6043 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGAT 122777 ||||| ||||| |||||||||| ||| | | | ||| ||||| || ||||||||||| Sbjct 6044 GGCATCAGACCACGCTTCTTCAGCCAGAAGACCGATGCA-AATGAGCCAGAGAAGAAGAT 6102 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAA 122816 ||||| || ||||| || | ||| |||| ||| || Sbjct 6103 GCCCTCGACTGCAGCAAAAGCGACAAGTCGTTGGGCAAA 6141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628018991887200