Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq40 152 6e-32 seq1499 109 7e-19 >seq40 Length=17677 Score = 152 bits (168), Expect = 6e-32 Identities = 386/580 (67%), Gaps = 9/580 (2%) Strand=Plus/Plus Query 118977 TCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACC 119036 |||| || || || |||| | ||||| | | || ||| | |||| | || || Sbjct 2299 TCTGCAAGACCCGGAGCCTCGTTAGGGCACATCAAAGTCCACTCACCATTGGCTTCGACT 2358 Query 119037 CGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCT 119096 |||||||||||||| || |||||||| || || |||| ||||| ||| ||| ||||| Sbjct 2359 CGCTTCATGAAGAGATCCGGGATCCAAAGGGCAAAGAATAGATCTCGAGCGCGGACTTCT 2418 Query 119097 TCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCC 119156 || | || ||||| ||||| |||| || || | || || || ||||| || || Sbjct 2419 TCCTTGCCGTGATTCTTCCGCAAATCCAGGAATTCAAAGACGTCGGCATGCCATGGCTCG 2478 Query 119157 AGGTACACCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCAGTG 119213 ||||||| |||| | || ||| || | || | ||||| | || ||| Sbjct 2479 AGGTACATGGCGAAAGCTCCGGGACGCTTGTTGCCTCCTTGATCGACATAGCGGGCGGTG 2538 Query 119214 GCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGT-CCCCCGA-A 119271 ||| || || || ||||| |||| || |||| ||| |||||| || ||||||| | Sbjct 2539 TTGTTGAAGACGCGTAGCATAGGAACAATGCCATTGGAGGAGCCATTGGTGCCCCCGATA 2598 Query 119272 TACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTG 119331 |||||| || | || | | |||||||| || ||||| || || || ||| | Sbjct 2599 TACGAGCCT--GTAGCGCGAATGCGGTGGATGTTCAGGCCAATGCCACCGGCAGTCTTCG 2656 Query 119332 AGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTG 119391 |||| | || ||| |||| || ||||||| || ||||| || |||| | Sbjct 2657 AGATGAGAGCACACGTTTTGAGGGTGTCGTAGATGCCGTCGATACTATCCTCCTTCATGT 2716 Query 119392 CGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTG 119451 |||| | |||||| ||||| |||||| || || ||||| ||||| | || || | Sbjct 2717 CGATCAAGAAGCATGAGGACATCTGAGGCTGTGGGGTGCCAGCATTGAACAAGGTAGGGG 2776 Query 119452 TCGCGTGGATGAA-CATACCTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATG 119510 ||||||| |||| || | || ||||| | ||||||||| | ||| | ||| Sbjct 2777 ACGCGTGGGTGAAGTATTTC-TGAGACATGAGATGGTAGGTCTCGATGACCTTGTCGATG 2835 Query 119511 TCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGT 119550 | || |||| ||||| | | ||| ||||||| ||||| Sbjct 2836 TTGTCGTCGTGTATACCCACAGCGACACGCATAATCATGT 2875 Score = 127 bits (140), Expect = 3e-24 Identities = 682/1082 (63%), Gaps = 32/1082 (3%) Strand=Plus/Plus Query 117805 TGAACTGAATGGGTCTCGCCTTGGC---CTTTGATCGGAGGTAGTACATCCCCGTCTTGA 117861 ||||||| ||||| |||| ||| | ||| || || |||||||| ||||| || | Sbjct 1074 TGAACTGGATGGG---CGCCGAGGCAGCCATTGTGCGCAGATAGTACATGCCCGTTTTCA 1130 Query 117862 GCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCA 117921 ||| ||||||| | | |||||| || | | ||| | || || | || Sbjct 1131 AGCCCATCTTCCAGCCGGCGAAATGCATCGATGTTATCTTACCCATTGTGGGGTCCTTCA 1190 Query 117922 TGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAA 117981 || | ||||| |||||||||||||| ||| || || || || ||||| | Sbjct 1191 TGTGAATGTTCAAGGACTGGGATTGATCGATAAAGGCACCGCGGTCGGCGGCCATTTG-- 1248 Query 117982 TCACATCCTTCATCT---TGATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTG 118038 |||| || || |||| ||||| || ||| ||||||| ||| || ||| | | Sbjct 1249 -CACAATCTGGCGCTGGCTGATCTCCCAGACCGTCTTGTAGAGCGACTTGATGTCAGCGG 1307 Query 118039 GGATATCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGATCCTTCATATCCT 118098 |||| | ||| || ||||||||||| || | || ||| | | |||||| | | Sbjct 1308 GGATGTTGGGGATGTTCTGGATGGATCCGCCGTCGGCGATGATGCGGTTCTTCATGTTGT 1367 Query 118099 TTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACT 118158 |||||||| || || | |||||||| | || |||||| || ||| | Sbjct 1368 CCGACCAGAGGCCCATATCGACGAGATCCTTGAGCAGCCAAGGATTGACGACCTGAAATT 1427 Query 118159 CACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGT 118218 | ||||| || || | ||| ||||| | ||||| || || ||||| ||||||| Sbjct 1428 CGCCCGCTAGCACACGACGGGAATATATATTCGAGGTGTAAGGTTCGAAGCATTCATTGT 1487 Query 118219 TACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGA 118278 | || | ||| |||| ||| ||||| ||||||||||| |||| ||| ||| || || | Sbjct 1488 TGCCGAGGATCTGGGATGTCGAGGCCGTGGGCATGGGGGCCACGAGGAGGGAATTGCGAA 1547 Query 118279 GACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTC---GTAGTTGAGCTTTGTCT 118335 ||| | | ||| | ||| | |||||||| | || | | || Sbjct 1548 CACCGTGCTTGGCGATGTTGGACCGGAGCGTATCCCAGTCCCAGAGGTCGGACGGAGTGA 1607 Query 118336 CCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCT 118395 | || ||||||||| |||||||| |||||||| | || || || || | || Sbjct 1608 CGCC---CCACATATCTTGTTGGAGGATCCCTTGGGAGACAGGGGAGCCTTCGTAGGTGG 1664 Query 118396 CATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTG 118455 |||||||| | | || | ||| | || |||| | ||||| || || | Sbjct 1665 AGTATGGGCCGAGTTCTTTGGCGATCTCGCAAGATGCGGTGAGGCCGGCGTGGTAGATGG 1724 Query 118456 TTTCAAAAATGCGAGCATTCA-TTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCAC 118514 |||||||||| | |||| |||||| || || || || |||| | |||| Sbjct 1725 TTTCAAAAATCTGCTTGTTCAGCTGCCTT-GCTTCCGGCGAGTCGAACGGCATTCGGAGG 1783 Query 118515 AAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTA 118574 | ||| |||| || || ||||| || || || || | || ||||| | | ||| Sbjct 1784 GCGAGGAATGCATCGGCAAGTCCTTGTACCCCAAGACCGACCGGTCGATGGCGGAAATTG 1843 Query 118575 GACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTG 118634 | || || || || ||||| | || ||||| | | || || ||| | Sbjct 1844 CTCCTCTTGGCTTCTTCTACAGGATAGTAGTTGACCTCGATGATTTTGTTCAGGTTTCTT 1903 Query 118635 GTGACAACCTTTGTGATTTCATGAAGCTT------TTCGTAATCAAAACTGCGAGTCTCT 118688 || || ||| |||| || || || || ||||| || | |||| || Sbjct 1904 GTCACCACCCGGGTGACCTCGTGTAGTTTGGCAAAGTCGTACTC---TCCACGAG---CT 1957 Query 118689 TCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTA 118748 ||| || | | || ||||| | || |||||||| || || | |||||| Sbjct 1958 GCATCTACGAAGGTTGGGAGGGCAAGGGAAGCCAGATTGCAGACTGCAACCTCATCAGGC 2017 Query 118749 TCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTT 118808 | ||||| || ||||| |||||||||||||| || || ||||| |||| |||||| Sbjct 2018 GCGGTGTATTCGATAATCTCCGTGCACAAGTTGGAGCTACGGATGGTACCCAGGTTCTTC 2077 Query 118809 TGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTT 118868 || || ||| ||| ||||||||||| |||||| | || | || ||||| || Sbjct 2078 TGGTTGCTCTTGCGGTTGGCGGCATCCTTGTATAGCATGAACGGGTTGCCAGTCTCGGTC 2137 Query 118869 TG 118870 || Sbjct 2138 TG 2139 >seq1499 Length=34637 Score = 109 bits (120), Expect = 7e-19 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || ||| | ||||| || || ||||||||||| || || ||| |||||| Sbjct 5984 GCAAAGTCAGTGTGCATTCCCTCATCCCGCGAGATGAGTTCGTTGGAAAAGGTCAGACCG 6043 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 ||||| ||||| |||||||||| |||||| | || ||||||||||||||||||||| Sbjct 6044 GGCATCAGACCACGCTTCTTCAGCCAGAAGACCGATGCAAATGAGCCAGAGAAGAAGATG 6103 Query 130136 CCCTCCAC 130143 ||||| || Sbjct 6104 CCCTCGAC 6111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618422390660920