Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq40 168 8e-37 seq1499 96.9 4e-15 >seq40 Length=17677 Score = 168 bits (186), Expect = 8e-37 Identities = 394/586 (67%), Gaps = 19/586 (3%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 |||||| ||||| | ||||| || || | ||||| || | || |||| || ||| Sbjct 2882 CCACAGCACATGATTATGCGTGTCGCTGTGGGTATACACGACGACAACATCGACAAGGTC 2823 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATG-TTCATTCACGCAACACCAACCCTCTT 104340 | ||||| ||| | ||||| || | || |||| ||||| | || ||| | || Sbjct 2822 ATCGAGACCTACCATCTCATGTCTCA-GAAATACTTCACCCACGCGTCCCCTACCTTGTT 2764 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||||||||| || ||| || || |||||| |||||| | |||| || |||||||| Sbjct 2763 CAATGCTGGCACCCCACAGCCTCAGATGTCCTCATGCTTCTTGATCGACATGAAGGAGGA 2704 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 ||| |||| ||||| | || || | |||||| | ||||| ||| || || Sbjct 2703 TAGTATCGACGGCATCTACGACACCCTCAAAACGTGTGCTCTCATCTCGAAGACTGCCGG 2644 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGGG-ACA 104518 || ||||| || ||||||| | | || | | ||||||| ||||||| || Sbjct 2643 TGGCATTGGCCTGAACATCCACCGCATTCGCGCTA--CAGGCTCGTATATCGGGGGCACC 2586 Query 104519 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 104578 ||||| || |||| ||| |||| ||||| ||||| || ||| ||| || |||||| Sbjct 2585 AATGGCTCCTCCAATGGCATTGTTCCTATGCTACGCGTCTTCAACAACACCGCCCGCTAT 2526 Query 104579 GTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGG 104632 || |||||| || ||||| ||| || |||| | || || ||||||||| Sbjct 2525 GTCGATCAAGGAGGCAACAAGCGTC---CCGGAGCTTTCGCCATGTACCTCGAGCCATGG 2469 Query 104633 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG--CGC 104690 || || || || | || ||||| || ||||| || || || | || || | ||| Sbjct 2468 CATGCCGACGTCTTTGAATTCCTGGATTTGCGGAAGAATCACGGCAAGGAAGAAGTCCGC 2409 Query 104691 GGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 104750 | | || ||||| |||| || || ||||| || ||||||||||||||| |||| || | Sbjct 2408 GCT--CGAGATCTATTCTTTGCCCTTTGGATCCCGGATCTCTTCATGAAGCGAGTCGAAG 2351 Query 104751 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCT 104796 | ||| | ||| || | | || || || |||| || ||||| Sbjct 2350 CCAATGGTGAGTGGACTTTGATGTGCCCTAACGAGGCTCCGGGTCT 2305 >seq1499 Length=34637 Score = 96.9 bits (106), Expect = 4e-15 Identities = 159/224 (71%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGC 94792 |||||| ||||| | ||||| || || |||||| || ||| | | |||| | | Sbjct 6205 AGTTCCTTGTATCCGCAAGAAGGCCGACTGGGCTCTGCGATGGATAGCCGACAAGAACTC 6146 Query 94793 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 94852 | ||||| | ||||| |||| ||||| || ||||| |||||||||||||| | Sbjct 6145 AA-CTTTTGCCCAACGACTTGTCGCTTTTGCTGCAGTCGAGGGCATCTTCTTCTCTGGCT 6087 Query 94853 CCTTCTGC-GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCC 94911 | || ||| | | | ||||| |||||||| ||||| ||||| ||||| ||| ||| Sbjct 6086 CATT-TGCATCGGTCTTCTGGCTGAAGAAGCGTGGTCTGATGCCCGGTCTGACCTTTTCC 6028 Query 94912 AACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||| || ||||| || || |||||| | ||| || ||||| Sbjct 6027 AACGAACTCATCTCGCGGGATGAGGGAATGCACACTGACTTTGC 5984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583248719210680