Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1307 131 5e-25 seq369 93.3 1e-13 >seq1307 Length=69414 Score = 131 bits (144), Expect = 5e-25 Identities = 155/209 (74%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| ||||| || ||| || || || || || || || | ||| |||||||| || | Sbjct 39085 CAAG-TGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGACAGTGTCCGCCCATCCTCCA 39027 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 | ||||| || |||||||| || || || || || || || || || || || ||||| | Sbjct 39026 GCTGTTTGCCTGCAAAGATCAGGCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCCTGGA 38967 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || || || ||||| || |||| || || | ||| ||||| ||||| | ||||||| Sbjct 38966 TCTTCGCCTTGACATTGTCTATCGTGTCTGACGATTCGACTTCCAGTGTGATGGTCTTTC 38907 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCATT 140738 |||| || || || ||||| ||||||||| Sbjct 38906 CGGTCAGGGTCTTCACAAAGATCTGCATT 38878 Score = 127 bits (140), Expect = 6e-24 Identities = 141/187 (75%), Gaps = 1/187 (1%) Strand=Plus/Minus Query 140527 GAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTT 140586 || |||| |||||||| ||||| || |||||||| || || || || || || || | Sbjct 38352 GACCAAG-TGAAGAGTGGACTCCTTCTGAATATTGTAGTCGCTCAAGGTGCGACCGTCCT 38294 Query 140587 CAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCT 140646 |||| || |||||||||||||| ||||| || ||||| || ||||||||||| || |||| Sbjct 38293 CAAGCTGCTTTCCAGCAAAGATGAGACGCTGTTGATCCGGGGGAATTCCTTCCTTGTCCT 38234 Query 140647 GAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCT 140706 | || || || || || ||||| |||| || || | || || ||||| || | |||| Sbjct 38233 GGATCTTGGCCTTGACGTTATCGATCGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCT 38174 Query 140707 TTCCGGT 140713 | || || Sbjct 38173 TGCCAGT 38167 Score = 127 bits (140), Expect = 6e-24 Identities = 162/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| |||||||| | | || || ||||||||||| || || ||||| || || | Sbjct 38657 TTTGCATGCCACCACGGAGACGGAGGACGAGATGAAGAGTGGATTCCTTTTGGATGTTGT 38598 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || || ||||| || || || || || ||||| ||||| || |||| Sbjct 38597 AGTCGGAGAGAGTACGGCCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGTTGAT 38538 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | ||||| || || ||||| |||||||| || || |||||||| || || | || || | Sbjct 38537 CGGGAGGGATACCCTCTTTGTCCTGAATCTTGGCCTTTACATTGTCGATGGTGTCCGAAG 38478 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 || || || || |||| ||||| || || || || || || Sbjct 38477 ACTCCACCTCCAGGGTAATGGTCTTGCCAGTCAGGGTCTTGAC 38435 Score = 111 bits (122), Expect = 5e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| ||||| || | | || || ||||| || || || ||||| || || || || || Sbjct 38881 CATTCCACCGCGCAGACGGAGGACGAGATGTAGGGTGGATTCTTTCTGGATGTTGTAGTC 38822 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||| || |||||||| | |||||| || || ||||| | || || || || || Sbjct 38821 GGAGAGTGTGCGGCCATCTTCTAATTGTTTGCCGGCGAAGATCAAGCGCTGTTGGTCCGG 38762 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || ||||||||||| || || || || || ||||| || || | || || | ||| Sbjct 38761 GGGGATGCCTTCTTTATCTTGTATCTTGGCCTTGACATTGTCGATTGTGTCTGAAGATTC 38702 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || || | ||||| || || | || || || || || ||||| Sbjct 38701 TACTTCGAGAGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATTTGCAT 38651 >seq369 Length=6626 Score = 93.3 bits (102), Expect = 1e-13 Identities = 103/137 (75%), Gaps = 3/137 (2%) Strand=Plus/Minus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || |||||||| |||| || || ||| |||| |||||||| || |||||||| || Sbjct 3635 CGGGGCACACCCAGTGTGACGTT---TTTGGATGAGACACCAGCGAAATGGAAAGTGTTG 3579 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | ||| || | ||||||||||| ||||| ||||| | || || |||||||| Sbjct 3578 AGTGTCATTTGTGTTGCTGGCTCACCAATCGACTGGGCTGCGAGGACACCGACCATTTCG 3519 Query 377578 CCAGGATTGACAATAGC 377594 || || |||| ||||| Sbjct 3518 CCCGGGCTGACGATAGC 3502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515222230675571