Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq40 199 4e-46 seq1499 98.7 1e-15 >seq40 Length=17677 Score = 199 bits (220), Expect = 4e-46 Identities = 407/602 (68%), Gaps = 6/602 (1%) Strand=Plus/Plus Query 79288 TACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCAC 79347 |||| | | | ||| | |||||||| | ||| | || ||||| ||||| |||||| Sbjct 2269 TACAGCGCCTCGAACTCGTCCCCATAAATATCTGCAAGACCCGGAGCCTCGTTAGGGCAC 2328 Query 79348 ATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGG 79407 |||| ||| || | | || || || ||||||||| ||||||||||| ||| Sbjct 2329 ATCAAAGTCCACTCACCATTGGCTTCGACTCGCTTCATGAAGAGATCCGGGATCCAAAGG 2388 Query 79408 GCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGA 79467 || ||| || || || || | || || | ||| || ||| |||| || || Sbjct 2389 GCAAAGAATAGATCTCGAGCGCGGACTTCTTCCTTGCCGTGATTCTTCCGCAAATCCAGG 2448 Query 79468 AAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTG 79527 || || | || |||||| ||||| ||||| || || |||||||| | || |||||| Sbjct 2449 AATTCAAAGACGTCGGCATGCCATGGCTCGAGGTACATGGCGAAAGCTCCGGGACGCTTG 2508 Query 79528 CCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATG 79587 ||| || || | ||| || ||||| ||||||||||| || || ||||| || || ||| Sbjct 2509 TTGCCTCCTTGATCGACATAGCGGGCGGTGTTGTTGAAGACGCGTAGCATAGGAACAATG 2568 Query 79588 CCGTCGGCGACGCCGTTCGT---CCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAG 79644 || | || | ||| || || |||| | || || | || | || |||||| | Sbjct 2569 CCATTGGAGGAGCCATTGGTGCCCCCGAT-ATACGAG--CCTGTAGCGCGAATGCGGTGG 2625 Query 79645 CAGTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCG 79704 || | || ||||| |||| ||| |||||| | || ||| ||||| || ||| Sbjct 2626 ATGTTCAGGCCAATGCCACCGGCAGTCTTCGAGATGAGAGCACACGTTTTGAGGGTGTCG 2685 Query 79705 TAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGG 79764 |||||||| ||||| || |||||||| ||| || |||||| |||||||| || Sbjct 2686 TAGATGCCGTCGATACTATCCTCCTTCATGTCGATCAAGAAGCATGAGGACATCTGAGGC 2745 Query 79765 TTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATC 79824 | || || || ||||| | ||| || | |||||| |||||| | || || ||| Sbjct 2746 TGTGGGGTGCCAGCATTGAACAAGGTAGGGGACGCGTGGGTGAAGTATTTCTGAGACATG 2805 Query 79825 AGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGC 79884 |||| ||| ||||| |||| || || |||| |||| || || || ||||| ||| Sbjct 2806 AGATGGTAGGTCTCGATGACCTTGTCGATGTTGTCGTCGTGTATACCCACAGCGACACGC 2865 Query 79885 AT 79886 || Sbjct 2866 AT 2867 Score = 176 bits (194), Expect = 5e-39 Identities = 671/1042 (64%), Gaps = 35/1042 (3%) Strand=Plus/Minus Query 19798 CGAGACCGGCACACCGTACATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAA 19857 |||||| |||| |||| |||| |||||||| ||||| ||| |||| || ||||| Sbjct 2134 CGAGACTGGCAACCCGTTCATGCTATACAAGGATGCCGCCAACCGCAAGAGCAACCAGAA 2075 Query 19858 GAACATCGGCGCGATCAAGTCG-TCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGC 19916 |||| | || | ||| || | |||||| |||| || || || || || || || Sbjct 2074 GAACCTGGGTACCATCC-GTAGCTCCAACTTGTGCACGGAGATTATCGAATACACCGCGC 2016 Query 19917 CGGACGAGACTGCCGTGTGTAATCTGGCGTCCCTGTGCCTGCCGACTTTCGTCAAGGC-- 19974 | || ||| ||| || || |||||||| ||||| ||| || || ||||| | || Sbjct 2015 CTGATGAGGTTGCAGTCTGCAATCTGGCTTCCCTTGCCCTCCCAACCTTCGTAGATGCAG 1956 Query 19975 CTCCTCC----TTCGACTTTGCCAAATTGTACGAGGTGACCCGGGTCGTCACGCGTAATC 20030 ||| | | ||||||||||||| | ||||||| |||||||| || || | || | Sbjct 1955 CTCGTGGAGAGTACGACTTTGCCAAACTACACGAGGTCACCCGGGTGGTGACAAGAAACC 1896 Query 20031 TGAATCGCGTCATCGATCGGAACTTTTACCCGACCGAGGCGGCGCGCAAGTCG---AATA 20087 |||| ||||||| |||| || || || | || |||| | ||| Sbjct 1895 TGAACAAAATCATCGAGGTCAACTACTATCCTGTAGAAGAAGC---CAAGAGGAGCAATT 1839 Query 20088 TGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCG 20147 | ||||| || ||| ||| | || || || || || ||||| | ||| | ||| Sbjct 1838 TCCGCCATCGACCGGTCGGTCTTGGGGTACAAGGACTTGCCGATGCATTCCTCGCCCTCC 1779 Query 20148 GCCTCTCATTCGACGATCCCAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGT 20207 | | | |||||| || | || | |||| |||||| || || || || | | Sbjct 1778 GAATGCCGTTCGACTCGCCGGAAGCAAGGCAGCTGAACAAGCAGATTTTTGAAACCATCT 1719 Query 20208 ACCACGCGGCCCTCCTGGAATCGTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGT 20267 ||||||| | |||| | ||| ||||| |||||||||| |||||| ||| || | Sbjct 1718 ACCACGCCGGCCTCACCGCATCTTGCGAGATCGCCAAAGAACTCGGCCCATACTCCACCT 1659 Query 20268 TCAAGGGGTCGCCCGCGTCCGAGGGTATCCTCCAGCCGGACATGTGGGGCGTCACTGAGA 20327 | | || || || | ||| | || |||||||| | || ||||||||||||||| | Sbjct 1658 ACGAAGGCTCCCCTGTCTCCCAAGGGATCCTCCAACAAGATATGTGGGGCGTCACTCCGT 1599 Query 20328 ATGAGTTTTGGAGC------GCCCTCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACT 20381 || | ||| | | ||| | | ||| | ||||| ||||||| | Sbjct 1598 CCGACCTCTGGGACTGGGATACGCTCCGGTCCAACATCGCCAAGCACGGTGTTCGCAATT 1539 Query 20382 CGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGG 20441 | | ||||| || |||||||| || |||||||| |||||||| | || ||||| || Sbjct 1538 CCCTCCTCGTGGCCCCCATGCCCACGGCCTCGACATCCCAGATCCTCGGCAACAATGAAT 1479 Query 20442 CTTTCGAGCCGTACACGACCAACATCTACTTGCGTCGTACACTGGCCGGTGAGTTCGTCA 20501 ||||| || ||||| | || || || | |||||| || || || || || ||| Sbjct 1478 GCTTCGAACCTTACACCTCGAATATATATTCCCGTCGTGTGCTAGCGGGCGAATT--TCA 1421 Query 20502 TGGTAAACAAGCACCTGGTCCGCGACTTGCAGAAGATCGATATG------TGGTCGCCCA 20555 ||| ||| ||| | | || | | | |||||||| |||||| || Sbjct 1420 -GGTCGTCAA--TCCTTGGCTGC-TCAAGGATCTCGTCGATATGGGCCTCTGGTCGGACA 1365 Query 20556 AAATTAAGAATGAAATTGTCCGAGCCGGCGGGAGCGTCCAG-GCAT--TGGATATCCCCC 20612 | || ||||| || || | |||||| | ||||| ||| | |||||| Sbjct 1364 ACATGAAGAACCGCATCATCGCCGACGGCGGATCCATCCAGAACATCCCCAACATCCCCG 1305 Query 20613 AGAACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACA 20672 || ||||| | |||| ||| || ||||| ||| ||| || | | | Sbjct 1304 CTGACATCAAGTCGCTCTACAAGACGGTCTGGGAGATCAGCCAGCGCCAGATTGTGCAAA 1245 Query 20673 TGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGA 20732 |||| ||||| ||||| |||| ||||| || |||||||| | || | |||| || Sbjct 1244 TGGCCGCCGACCGCGGTGCCTTTATCGATCAATCCCAGTCCTTGAACATTCACATGAAGG 1185 Query 20733 ATCCGAGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGA 20792 | || | ||| ||| | | || |||||| | ||||||| | | ||| | || | Sbjct 1184 ACCCCACAATGGGTAAGATAACATCGATGCATTTCGCCGGCTGGAAGATGGGCTTGAAAA 1125 Query 20793 CGGGCATGTACTATCTGCGGAC 20814 ||||||||||||||||||| || Sbjct 1124 CGGGCATGTACTATCTGCGCAC 1103 Score = 156 bits (172), Expect = 5e-33 Identities = 342/513 (67%), Gaps = 12/513 (2%) Strand=Plus/Minus Query 19118 ATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGAGACATACGAC 19177 ||||| ||||| || || || || | |||| || || ||| |||||| ||| | Sbjct 2867 ATGCGTGTCGCTGTGGGTATACACGACGACAACATCGACAAGGTCATCGAGACCTACCAT 2808 Query 19178 CTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAAC 19237 || ||| ||||| | |||||| |||||| | || ||| | ||||| || || || Sbjct 2807 CTCATGTCTCAGAAATACTTCACCCACGCGTCCCCTACCTTGTTCAATGCTGGCACCCCA 2748 Query 19238 AACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATC 19297 | || |||||||| || ||| | | | |||||||| || || || || |||||| Sbjct 2747 CAGCCTCAGATGTCCTCATGCTTCTTGATCGACATGAAGGAGGATAGTATCGACGGCATC 2688 Query 19298 TACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGG------ 19351 ||||| || ||||| ||| || | |||||| ||| |||| || || || Sbjct 2687 TACGACACCCTCAAAACGTGTGCTCTCATCTCGAAGACTGCCGGTGGCATTGGCCTGAAC 2628 Query 19352 ATCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCC 19411 |||||| || || || | | || | ||| || || || || || Sbjct 2627 ATCCACCGC------ATTCGCGCTACAGGCTCGTATATCGGGGGCACCAATGGCTCCTCC 2574 Query 19412 GACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGG 19471 | || || || || ||||| ||||||||||||||||| ||| | || ||| | || || Sbjct 2573 AATGGCATTGTTCCTATGCTACGCGTCTTCAACAACACCGCCCGCTATGTCGATCAAGGA 2514 Query 19472 GGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATG 19531 ||| ||| || || | |||||||| ||||||||||||||||| || |||||| | Sbjct 2513 GGCAACAAGCGTCCCGGAGCTTTCGCCATGTACCTCGAGCCATGGCATGCCGACGTCTTT 2454 Query 19532 GATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTC 19591 || ||||| || |||| ||| || || | || || | ||| ||| || || ||| Sbjct 2453 GAATTCCTGGATTTGCGGAAGAATCACGGCAAGGAAGAAGTCCGCGCTCGAGATCTATTC 2394 Query 19592 ACGGCCTTGTGGATTCCGGACCTATTCATGGAG 19624 ||| | ||||| ||||| || |||||| || Sbjct 2393 TTTGCCCTTTGGATCCCGGATCTCTTCATGAAG 2361 >seq1499 Length=34637 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTT 60031 ||||| ||||| || | |||||||| ||| || || || ||||||||||||||||| || Sbjct 6141 TTTGCCCAACGACTTGTCGCTTTTGC-TGCAGTCGAGGGCATCTTCTTCTCTGGCTCATT 6083 Query 60032 CTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGA 60091 | | |||||||| || |||||||| || ||||| || |||| || |||||||| Sbjct 6082 TGCATCGGTCTTCTGGCTGAAGAAGCGTGGTCTGATGCCCGGTCTGACCTTTTCCAACGA 6023 Query 60092 GCTGATTTCCCGGGACGAGGG 60112 || || || ||||| ||||| Sbjct 6022 ACTCATCTCGCGGGATGAGGG 6002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548513438680080