Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq40 199 4e-46 seq261 134 2e-26 >seq40 Length=17677 Score = 199 bits (220), Expect = 4e-46 Identities = 388/565 (69%), Gaps = 11/565 (2%) Strand=Plus/Minus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTAC-ACGCGTGTCCGTGAGACGTACGA 53253 ||||| ||||| ||||||| |||| ||| || | || | ||| ||||| ||| | Sbjct 2867 ATGCGTGTCGCTGTGGGTATACACGACGACAACATCGACAAG-GTCATCGAGACCTACCA 2809 Query 53254 CTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAA 53313 | ||| || || ||||| || ||||| | || ||| ||||||| ||||| || Sbjct 2808 TCTCATGTCTCAGAAATACTTCACCCACGCGTCCCCTACCTTGTTCAATGCTGGCACCCC 2749 Query 53314 TCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCAT 53373 || ||||||||||| |||||| || | | |||||||| || ||||||||||| Sbjct 2748 ACAGCCTCAGATGTCCTCATGCTTCTTGATCGACATGAAGGAGGATAGTATCGACGGCAT 2689 Query 53374 CTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCA 53433 |||||| || ||||| |||||| | |||||| ||| | ||||| || || | | Sbjct 2688 CTACGACACCCTCAAAACGTGTGCTCTCATCTCGAAGACTGCCGGTGGCATTGGCCTGAA 2629 Query 53434 CTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGAT 53491 | || | || | || || | ||| | ||| ||| || || ||| | || || Sbjct 2628 CA--TCCACCGCATTCGCGCTACAGGCTCGTATATCGGGGGCACCAATGGCTCCTCCAAT 2571 Query 53492 GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGT 53551 || || || |||||||| ||||||||||||||||| ||||| || ||| | || || || Sbjct 2570 GGCATTGTTCCTATGCTACGCGTCTTCAACAACACCGCCCGCTATGTCGATCAAGGAGGC 2511 Query 53552 GGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAG 53611 ||||| || | |||||||| ||||||||||| ||||| |||||| | | || Sbjct 2510 AACAAGCGTCCCGGAGCTTTCGCCATGTACCTCGAGCCATGGCATGCCGACGTCTTTGAA 2451 Query 53612 TTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACA 53671 || || || |||| |||||| || | ||||| | ||| || || || || Sbjct 2450 TTCCTGGATTTGCGGAAGAATCACGGCAAGGAAGAAGTCCGCGCTCGAGATCTATTCTTT 2391 Query 53672 GCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAG--GACGAGGAGTGGTACC 53729 || || ||||| ||||| ||||||||| || | | |||| | | |||||| Sbjct 2390 GCCCTTTGGATCCCGGATCTCTTCATG--AAGCGAGTCGAAGCCAATGGTGAGTGGACTT 2333 Query 53730 TGATGTGCCCGAACGAGTGCCCCGG 53754 |||||||||| |||||| || |||| Sbjct 2332 TGATGTGCCCTAACGAG-GCTCCGG 2309 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/200 (70%), Gaps = 8/200 (4%) Strand=Plus/Minus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGA-AGAGTCTGATTG---ACATG 55783 ||||| | | ||| |||||| |||||||| ||| || | | ||||| | ||| Sbjct 1298 TCAAGTCGCTCTACAAGACGGTCTGGGAGAT----CAGCCAGCGCCAGATTGTGCAAATG 1243 Query 55784 AGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAAT 55843 || || || ||||| | ||||| || |||||||| ||||||| |||| || | Sbjct 1242 GCCGCCGACCGCGGTGCCTTTATCGATCAATCCCAGTCCTTGAACATTCACATGAAGGAC 1183 Query 55844 CCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACG 55903 || || ||| ||| | | |||||||| || ||| ||||||| ||| | || ||| Sbjct 1182 CCCACAATGGGTAAGATAACATCGATGCATTTCGCCGGCTGGAAGATGGGCTTGAAAACG 1123 Query 55904 GGTATGTACTATCTGCGGAC 55923 || |||||||||||||| || Sbjct 1122 GGCATGTACTATCTGCGCAC 1103 >seq261 Length=7862 Score = 134 bits (148), Expect = 2e-26 Identities = 285/423 (67%), Gaps = 4/423 (1%) Strand=Plus/Plus Query 117150 ACCCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGA 117209 ||||||| || || || || || ||||| |||| ||||| |||||||| || ||||||| Sbjct 6635 ACCCAGTACCAATGCCGTCGGCTCCATTGATCAAGATCATAGGCACGACCGGGACGTAGA 6694 Query 117210 ACTCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCG 117269 || || || | | |||| || ||| |||| | | | | | ||| | Sbjct 6695 CTTCGGGTTCGATGGTTCGCTCGTCATCTGTGTTGTACGTCAAGAGGGGTTCATCAGCGG 6754 Query 117270 GATCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAG 117329 || ||| || ||| | | | || | |||||||| | |||||||||| ||| || | Sbjct 6755 TATTGAAGATCTTCCTCGCGAAAGGAGAGAGGCGAGTATAGATGTAACGAGCGCTGGCCG 6814 Query 117330 CATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAG-GTTCAGG 117388 || | ||||| | ||||| | ||||| | ||||| ||||| |||| || | Sbjct 6815 TGTCACTRCCACCTTCGAGACGACTTCCGAAATTGCCACTGGGCTC-AAGACARTTGACA 6873 Query 117389 TTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTG-ACAATCGTACCTTGGAGGCTCGCCTC 117447 ||||| | |||||| |||| ||||| |||| || || ||||| || || | || Sbjct 6874 TTGTTAGAGCCCACGAAGTCCTGAGC-AAGTCCTACGATTGTACCCTGCAGWGAAGTATC 6932 Query 117448 ACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTC 117507 ||| | ||||| || ||| | | || |||| || |||| | ||||||||||||| Sbjct 6933 ACCGTAYTGATATGCAGTCATACCAGAAACMGAGCCGGCAAGCTCAACCACCTTCATGTC 6992 Query 117508 TGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACC 117567 | | ||||||| ||||| ||||| || | ||||||||||| | ||||| || || Sbjct 6993 TTTCTTCAGGTTGCGCTTGAAGCAGGTRTARAGTACCTTGCGCTGTCCAGGCTTTAGGCC 7052 Query 117568 ATC 117570 || Sbjct 7053 GTC 7055 Score = 113 bits (124), Expect = 5e-20 Identities = 268/404 (66%), Gaps = 6/404 (1%) Strand=Plus/Plus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || ||||| ||||| || || || |||| || ||||| ||||| | ||| |||| | Sbjct 6637 CCAGTACCAATGCCGTCGGCTCCATTGATCAAGATCATAGGCACGACCGGGACGTAGACT 6696 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGA 151995 || || || | | | ||||||| | ||| |||| | || | ||||| | | Sbjct 6697 TCGGGTTCGATGGTTCGCTCGTCATCTGTGTTGTACGTCAAGAGGGGTTCATCAGCGGTA 6756 Query 151996 TCGAATATC--CGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCG 152053 | ||| ||| | ||| | | |||| | || || ||||||| || | |||||||| Sbjct 6757 TTGAAGATCTTCCTCGCG--AAAGGAGAGAGGCGAGTATAGATGTAACGAGCGCTGGCCG 6814 Query 152054 CATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGT 152113 || | |||||| | || || |||| || | ||| |||||| || |||| | Sbjct 6815 TGTCACTRCCACCTTCGAGACGACTTCCGAAATTGCCACTGGGCTCAAGACARTTGACAT 6874 Query 152114 TGTTGGCGCCCACGAAATTCTGAGCCAAATTC-ACAATCGTGCCCTGCAGACTCGCTTCA 152172 |||| | ||||||||| | |||||| || | | || || || |||||||| | ||| Sbjct 6875 TGTTAGAGCCCACGAAGTCCTGAGC-AAGTCCTACGATTGTACCCTGCAGWGAAGTATCA 6933 Query 152173 CCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCC 152232 |||| ||||| || ||| | | | | || || | || ||||||||||||| Sbjct 6934 CCGTAYTGATATGCAGTCATACCAGAAACMGAGCCGGCAAGCTCAACCACCTTCATGTCT 6993 Query 152233 GTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTG 152276 || ||||||| ||||| |||| || | ||||||||||| Sbjct 6994 TTCTTCAGGTTGCGCTTGAAGCAGGTRTARAGTACCTTGCGCTG 7037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547204665788600