Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1307 172 6e-38 seq40 159 4e-34 seq261 114 1e-20 seq1609 111 2e-19 seq1188 107 2e-18 >seq1307 Length=69414 Score = 172 bits (190), Expect = 6e-38 Identities = 167/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| || || |||||||| ||||| || ||||| ||||| || | ||| | Sbjct 38435 GTCAAGACCCTGACTGGCAAGACCATTACCCTGGAGGTGGAGTCTTCGGACACCATCGAC 38494 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| | ||||| || ||||||||||| ||||| || ||||| || || |||||||| || Sbjct 38495 AATGTAAAGGCCAAGATTCAGGACAAAGAGGGTATCCCTCCCGATCAACAGCGTCTCATC 38554 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 || || || ||||| ||||| || | ||||| || | ||||| || ||||||||||| Sbjct 38555 TTCGCCGGCAAGCAGCTCGAAGACGGCCGTACTCTCTCCGACTACAACATCCAAAAGGAA 38614 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||||||| ||| | ||||| || ||||| Sbjct 38615 TCCACTCTTCATCTCGTCCTCCGTCTCCGTGGTGG 38649 Score = 140 bits (154), Expect = 4e-28 Identities = 155/204 (76%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || |||||||| || || |||||||| ||||| || | || | || | ||||| Sbjct 38167 ACTGGCAAGACCATCACCCTTGAGGTGGAGTCCTCCGACACGATCGATAACGTCAAGGCC 38226 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || ||||||||||| |||||||| || || || |||||||| || |||||||| ||| Sbjct 38227 AAGATCCAGGACAAGGAAGGAATTCCCCCGGATCAACAGCGTCTCATCTTTGCTGGAAAG 38286 Query 27550 CAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCA 27608 || || ||||| | ||| ||| | ||| ||||| ||| | || ||||| ||||||||||| Sbjct 38287 CAGCTTGAGGACGGTCGCACCTTGAGC-GACTACAATATTCAGAAGGAGTCCACTCTTCA 38345 Query 27609 TCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||| | |||||||| || || Sbjct 38346 CTTGGTCCTCCGTCTTCGTGGAGG 38369 Score = 132 bits (146), Expect = 5e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| || ||||| ||||| || || || || || || || Sbjct 38878 AATGCAGATCTTTGTGAAGACCCTGACCGGAAAGACCATCACACTGGAAGTCGAATCGTC 38937 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | ||| | ||||| || || |||||||||||||| || || || ||||| Sbjct 38938 AGACACGATAGACAATGTCAAGGCGAAGATCCAGGACAAGGAGGGTATCCCACCGGACCA 38997 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||| || || ||||| || || || || ||||||| || || || | ||||| || Sbjct 38998 ACAGCGCCTGATCTTTGCAGGCAAACAGCTGGAGGATGGGCGGACACTGTCGGACTACAA 39057 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| ||| ||||| | || ||||||| || || ||||| Sbjct 39058 CATCCAGAAGGAGAGCACCCTTCACTTGGTGCTGCGTCTGCGTGGAGGACA 39108 Score = 123 bits (136), Expect = 3e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| | || |||||||| || ||||| || || || || Sbjct 38651 ATGCAAATCTTCGTCAAGACCTTGACAGGCAAGACCATCACTCTCGAAGTAGAATCTTCA 38710 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||||| || || || || || || || || || || ||||| Sbjct 38711 GACACAATCGACAATGTCAAGGCCAAGATACAAGATAAAGAAGGCATCCCCCCGGACCAA 38770 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || || || || ||| | || |||| || || || | ||||| || Sbjct 38771 CAGCGCTTGATCTTCGCCGGCAAACAATTAGAAGATGGCCGCACACTCTCCGACTACAAC 38830 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| || |||||||| || ||||| ||| | ||||| ||||||||| Sbjct 38831 ATCCAGAAAGAATCCACCCTACATCTCGTCCTCCGTCTGCGCGGTGGA 38878 >seq40 Length=17677 Score = 159 bits (176), Expect = 4e-34 Identities = 382/573 (67%), Gaps = 15/573 (3%) Strand=Plus/Plus Query 81186 CTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTC 81245 ||||||||||||||||| ||| || | | || || ||||||||| || Sbjct 2316 CTCGTTAGGGCACATCAAAGTCCACTCACCATTGGCTTCGACTCGCTTCATGAAGAGATC 2375 Query 81246 AGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCG--CCTCCTCATCACCCTGGTTG 81303 |||||||| ||||| ||| || || || |||||| | || || | || || || Sbjct 2376 CGGGATCCAAAGGGCAAAGAATAGATCTCG--AGCGCGGACTTCTTCCTTGCCGTGATTC 2433 Query 81304 AGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATC 81363 ||||| || || || || | || ||| |||||||||||||| || |||| ||||| Sbjct 2434 TTCCGCAAATCCAGGAATTCAAAGACGTCGGCATGCCATGGCTCGAGGTACATGGCGAAA 2493 Query 81364 GACCCCTTGCGACG------GCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACA 81417 | || | |||| ||| || || | ||| || ||||| || ||| || || Sbjct 2494 GCTCC---GGGACGCTTGTTGCCTCCTTGATCGACATAGCGGGCGGTGTTGTTGAAGACG 2550 Query 81418 CGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTG 81477 || | |||||| | || |||| || || || || ||| ||||| ||| || | Sbjct 2551 CGTAGCATAGGAACAATGCCATTGGAGGAGCCATTGGTGCCCCCGATATACGAGCCTGTA 2610 Query 81478 GCGCGCACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACAC 81537 ||||| | | ||| || || |||||||| | ||| || || |||||||| Sbjct 2611 GCGCGAATGCGGTGGATGTTCAGGCCAATGCCACCGGCAGTCTTCGAGATGAGAGCACAC 2670 Query 81538 CGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAG 81597 || | ||| || || || || ||||| ||||| | |||||||| | |||||| || Sbjct 2671 GTTTTGAGGGTGTCGTAGATGCCGTCGATACTATCCTCCTTCATGTCGATCAAGAAGCAT 2730 Query 81598 CTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAA 81657 ||||||||||| | | ||| |||||||||| || |||| |||||| |||| Sbjct 2731 GAGGACATCTGAGGCTGTGGGGTGCCAGCATTGAACAAGGTAGGGGACGCGTGGGTGAAG 2790 Query 81658 TAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTG-GAATATCGTCACCGTGAAT 81716 || | ||||| || | ||||| || |||| | || || | ||| |||| || Sbjct 2791 TATTTCTGAGACATGAGATGGTAGGTCTCGATGAC-CTTGTCGATGTTGTCGTCGTGTAT 2849 Query 81717 ACCGATAGCTACACGCATAAACATGTACTGGGG 81749 ||| | ||| |||||||||| ||||| ||| || Sbjct 2850 ACCCACAGCGACACGCATAATCATGTGCTGTGG 2882 Score = 107 bits (118), Expect = 2e-18 Identities = 193/281 (69%), Gaps = 6/281 (2%) Strand=Plus/Plus Query 80809 TCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAG 80868 ||||||| ||||||||| | ||| || ||||| || || || || ||||| |||| Sbjct 1880 TCGATGATTTTGTTCAGGTTTCTTGTCACCACCCGGGTGACCTCGTGTAGTTTGGCAAAG 1939 Query 80869 TCGAATTG-----GTTCCCCTTC-ACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCAC 80922 ||| | | | | | || || || | || ||| ||||| ||||||||||| Sbjct 1940 TCGTACTCTCCACGAGCTGCATCTACGAAGGTTGGGAGGGCAAGGGAAGCCAGATTGCAG 1999 Query 80923 ACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTA 80982 || || ||||| |||| | || | |||| || ||||||||||| || || Sbjct 2000 ACTGCAACCTCATCAGGCGCGGTGTATTCGATAATCTCCGTGCACAAGTTGGAGCTACGG 2059 Query 80983 ATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTAC 81042 || ||||||||||| |||||||| |||| |||| || |||||||| |||| || Sbjct 2060 ATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTATAGCATGAAC 2119 Query 81043 GGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCA 81083 ||| | || |||||| ||| | || ||||||| || ||| Sbjct 2120 GGGTTGCCAGTCTCGGTCTGAGCCTCTAGGATGGAGTACCA 2160 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || |||||||||||||||||||| || | |||| ||||||||||| | ||||| || Sbjct 1103 GTGCGCAGATAGTACATGCCCGTTTTCAAGCCCATCTTCCAGCCGGCGAAATGCATCGAT 1162 Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157 | | ||| | | |||||||| || |||| ||||||| ||||| || ||| ||| Sbjct 1163 GTTATCTTACCCATTGTGGGGTCCTTCATGTGAATGTTCAAGGACTGGGATTGATCGATA 1222 Query 80158 AAAGCCCCACGATCTGCCGCCATTT 80182 || || || || || || ||||||| Sbjct 1223 AAGGCACCGCGGTCGGCGGCCATTT 1247 >seq261 Length=7862 Score = 114 bits (126), Expect = 1e-20 Identities = 283/430 (66%), Gaps = 6/430 (1%) Strand=Plus/Minus Query 31984 GACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTGTCG 32043 |||||||| |||||| |||||||||||| | || ||||| ||||| |||||| | Sbjct 7055 GACGGCCTAAAGCCTGGACAGCGCAAGGTACTYTAYACCTGCTTCAAGCGCAACCTGAAG 6996 Query 32044 AGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCAC 32103 | ||||||||||||| |||| | |||| || | | || || ||||| || Sbjct 6995 AAAGACATGAAGGTGGTTGAGCTTGCCGGCTCKGTTTCTGGTATGACTGCATATCARTAC 6936 Query 32104 GGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAAT 32163 || || | || || ||||| || || || ||||||||| |||| || || | || Sbjct 6935 GGTGATACTTCWCTGCAGGGTACAATCGTAGGACTTGCTCAGGACTTCGTGGGCTCTAAC 6876 Query 32164 AACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGAT 32223 || | || | || ||||| ||| | || || | || |||| ||||| | || Sbjct 6875 AATGTCAAYTGTCTTGAGCCCAGTGGCAATTTCGGAAGTCGTCTCGAAGGTGGYAGTGAC 6816 Query 32224 GCTGCGAGCTCCCGTTACATCTTCACCCGTCTCGCACCTTCGACGCGCAAGATTTTCGAC 32283 | || ||| | |||||||||| || || ||| | |||| || | ||||| ||| | Sbjct 6815 ACGGCCAGCGCTCGTTACATCTATACTCGCCTCTCTCCTTTCGCGAGGAAGATCTTCAAT 6756 Query 32284 CCGTCGGACGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCG---GGTCGAGCCG 32340 | | || || | | | | |||||| ||||||| |||| |||| || Sbjct 6755 ACCGCTGATGAACCCCTCTTGACGTACAACACAGATGACG---AGCGAACCATCGAACCC 6699 Query 32341 GTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTGAACGGTGCAGAAGGCATCGGAACG 32400 | ||||| ||||| | || ||||||||| | || || || || ||||| || || Sbjct 6698 GAAGTCTACGTCCCGGTCGTGCCTATGATCTTGATCAATGGAGCCGACGGCATTGGTACT 6639 Query 32401 GGGTTCAGTT 32410 |||| |||| Sbjct 6638 GGGTGGAGTT 6629 >seq1609 Length=13884 Score = 111 bits (122), Expect = 2e-19 Identities = 136/183 (74%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473 ||| ||||| || || || |||||||| || || || ||||| ||||| || | ||| Sbjct 319 CTTCGTCAAAACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCCGACACCAT 378 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 | ||| | ||||| || || |||||||||||||| || || || ||||||||||| | Sbjct 379 CGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGGATCCCGCCGGACCAGCAGCGCTT 438 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAA 27592 || || || || ||||| |||||||| | | ||| | ||| || ||||| |||||| Sbjct 439 GATCTTCGCGGGCAAGCAGCTCGAGGACGGGAGGACCTTGAGC-GATTATAACATCCAAA 497 Query 27593 AGG 27595 ||| Sbjct 498 AGG 500 >seq1188 Length=31586 Score = 107 bits (118), Expect = 2e-18 Identities = 135/183 (74%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473 ||| ||||| || || || |||||||| || ||||| ||||| || || || | ||| Sbjct 1538 CTTCGTCAAAACCCTGACGGGCAAGACCATCACTCTCGAGGTCGAATCCTCCGACACCAT 1479 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 | ||| | ||||| || || |||||||||||||| || || || ||||||||||| | Sbjct 1478 CGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGGATCCCGCCGGACCAGCAGCGCTT 1419 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAA 27592 || || || || ||||| |||||||| | | ||| | ||| || ||||| |||| | Sbjct 1418 GATCTTCGCGGGCAAGCAGCTCGAGGACGGGAGGACCTTGAGC-GATTATAACATCCAGA 1360 Query 27593 AGG 27595 ||| Sbjct 1359 AGG 1357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570298587445840