Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1307 138 1e-27 >seq1307 Length=69414 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || || || |||| |||||| | || ||||| ||||| ||| | || Sbjct 38650 CATGCAAATCTTCGTCAAGACCTTGACAGGCAAGACCATCACTCTCGAAGTAGAATCTTC 38709 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | ||||| || || ||||| ||||||||||| || || || || Sbjct 38710 AGACACAATCGACAATGTCAAGGCCAAGATACAAGATAAAGAAGGCATCCCCCCGGACCA 38769 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| || || | ||||||||||||||| ||||| | || | ||||| ||||| Sbjct 38770 ACAGCGCTTGATCTTCGCCGGCAAACAATTAGAAGATGGCCGCACACTCTCCGACTACAA 38829 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || || || ||| ||||| | || | ||| |||| ||||| || Sbjct 38830 CATCCAGAAAGAATCCACCCTACATCTCGTCCTCCGTCTGCGCGGTGGAAT 38880 Score = 118 bits (130), Expect = 9e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27000 GTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAG 27059 || || || ||||| |||||| | ||||| || || ||||| | || ||| | || || Sbjct 38435 GTCAAGACCCTGACTGGCAAGACCATTACCCTGGAGGTGGAGTCTTCGGACACCATCGAC 38494 Query 27060 ATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATA 27119 | || || || ||||| |||||||| || || || ||||||||||||||| | || Sbjct 38495 AATGTAAAGGCCAAGATTCAGGACAAAGAGGGTATCCCTCCCGATCAACAGCGTCTCATC 38554 Query 27120 TACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAG 27179 | ||||||||| || | |||||| | || | ||||| |||||||| |||||||| Sbjct 38555 TTCGCCGGCAAGCAGCTCGAAGACGGCCGTACTCTCTCCGACTACAACATCCAAAAGGAA 38614 Query 27180 TCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || | ||| | || | ||| | || |||||||| Sbjct 38615 TCCACTCTTCATCTCGTCCTCCGTCTCCGTGGTGGCAT 38652 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27012 ACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAA 27071 || |||||| | || || ||||| ||||| | |||||| |||| || | ||||| Sbjct 38167 ACTGGCAAGACCATCACCCTTGAGGTGGAGTCCTCCGACACGATCGATAACGTCAAGGCC 38226 Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || || || ||||| ||||| || || || |||||||||||| | || | || || || Sbjct 38227 AAGATCCAGGACAAGGAAGGAATTCCCCCGGATCAACAGCGTCTCATCTTTGCTGGAAAG 38286 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 || | || ||| || ||| | ||| ||||| ||||| |||||||| || | || Sbjct 38287 CAGCTTGAGGACGGTCGCACCTTGAGCGACTACAATATTCAGAAGGAGTCCACTCTTCAC 38346 Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| | ||| | || || ||||| Sbjct 38347 TTGGTCCTCCGTCTTCGTGGAGGCAT 38372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434909391752640