Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1307 159 8e-34 seq1188 150 4e-31 seq1609 147 5e-30 seq59 111 4e-19 >seq1307 Length=69414 Score = 159 bits (176), Expect = 8e-34 Identities = 171/226 (76%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || || | |||||| ||| ||| || |||||||| || |||| || Sbjct 39103 TCCACGCAGACGCAGCACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGACAG 39044 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 |||| ||||| |||||||| |||||||| ||||| ||||| |||||||| || || | Sbjct 39043 TGTCCGCCCATCCTCCAGCTGTTTGCCTGCAAAGATCAGGCGCTGTTGGTCCGGTGGGAT 38984 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || ||||||||||||||||| || || || || || ||||| || ||| || || Sbjct 38983 ACCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCTATCGTGTCTGACGATTCGACTTC 38924 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || ||||| |||||||| || || ||||| ||||| | ||||||| Sbjct 38923 CAGTGTGATGGTCTTTCCGGTCAGGGTCTTCACAAAGATCTGCATT 38878 Score = 145 bits (160), Expect = 2e-29 Identities = 156/204 (76%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAA 210948 || |||||| | ||||| | ||||||||||||||| || || || || || || | ||| Sbjct 38367 TCCACGAAGACGGAGGACCAAGTGAAGAGTGGACTCCTTCTGAATATTGTAGTCGCTCAA 38308 Query 210949 GGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 || | | || || || |||||||| || || ||||| || || ||||| || || |||| Sbjct 38307 GG-TGCGACCGTCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGTTGATCCGGGGGAA 38249 Query 211009 CTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCT 211068 ||||||||||||||||||||| || ||||| ||||| ||||| ||| || |||| Sbjct 38248 TTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTATCGATCGTGTCGGAGGACTCCACCT 38189 Query 211069 CGAGAGTGATCGTCTTTCCCGTGA 211092 | || ||||| ||||| || |||| Sbjct 38188 CAAGGGTGATGGTCTTGCCAGTGA 38165 Score = 140 bits (154), Expect = 8e-28 Identities = 151/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || ||||||||||| || ||||||||||| || || | || || | || ||| Sbjct 38634 AGGACGAGATGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCT 38575 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| || || ||||| || ||||| | || || |||||| Sbjct 38574 TCGAGCTGCTTGCCGGCGAAGATGAGACGCTGTTGATCGGGAGGGATACCCTCTTTGTCC 38515 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || || ||||||||||| || || ||||| || || || ||| Sbjct 38514 TGAATCTTGGCCTTTACATTGTCGATGGTGTCCGAAGACTCCACCTCCAGGGTAATGGTC 38455 Query 211083 TTTCCCGTGAGAGTCTTTAC 211102 || || || || ||||| || Sbjct 38454 TTGCCAGTCAGGGTCTTGAC 38435 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || || || ||||| ||||| |||||||| || || | || || | |||||| Sbjct 38862 AGGACGAGATGTAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGTGTGCGGCCATCT 38803 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || | || ||||| |||||||| | ||| |||||||| || || | ||||| || || Sbjct 38802 TCTAATTGTTTGCCGGCGAAGATCAAGCGCTGTTGGTCCGGGGGGATGCCTTCTTTATCT 38743 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || || ||||| ||||| || ||| || ||||||||||| ||| Sbjct 38742 TGTATCTTGGCCTTGACATTGTCGATTGTGTCTGAAGATTCTACTTCGAGAGTGATGGTC 38683 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||||| || || | ||||| Sbjct 38682 TTGCCTGTCAAGGTCTTGACGAAGATTTGCAT 38651 >seq1188 Length=31586 Score = 150 bits (166), Expect = 4e-31 Identities = 143/180 (79%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGAT 210985 || |||||||||||||| | ||| |||||| || || || ||||||||||| |||||||| Sbjct 1359 TTCTGGATGTTATAATCGCTCAA-GGTCCTCCCGTCCTCGAGCTGCTTGCCCGCGAAGAT 1417 Query 210986 AAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTC 211045 | ||| || ||||| || || | || ||||||||||||||||| || || || || Sbjct 1418 CAAGCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTC 1477 Query 211046 GATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 ||||||||| ||| ||| |||||||||||||| ||||| ||||| || || || || || Sbjct 1478 GATGGTGTCGGAGGATTCGACCTCGAGAGTGATGGTCTTGCCCGTCAGGGTTTTGACGAA 1537 >seq1609 Length=13884 Score = 147 bits (162), Expect = 5e-30 Identities = 142/180 (79%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGAT 210985 ||||||||||||||||| | ||||| |||| || || || ||||||||||| |||||||| Sbjct 498 TTTTGGATGTTATAATCGCTCAAGG-TCCTCCCGTCCTCGAGCTGCTTGCCCGCGAAGAT 440 Query 210986 AAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTC 211045 | ||| || ||||| || || | || ||||||||||||||||| || || || || Sbjct 439 CAAGCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTC 380 Query 211046 GATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 ||||||||| ||| || |||||||| ||||| ||||| ||||| || || || || || Sbjct 379 GATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTTTTGACGAA 320 >seq59 Length=11125 Score = 111 bits (122), Expect = 4e-19 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 210902 TAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATC 210961 || ||| ||||| || |||||||| |||||||| || || || | || || | || || Sbjct 4357 TAAGACCAGGTGGAGCGTGGACTCCTTTTGGATATTGTAGTCTGAGAGAGTGCGACCGTC 4298 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 || ||||||||||| |||||||| |||||||| |||||||| || | |||||||||||| Sbjct 4297 CTCGAGCTGCTTGCCCGCGAAGATCAGGCGTTGCTGGTCAGGTGGGATTCCTTCCTTGTC 4238 Query 211022 CTGGAT 211027 | ||| Sbjct 4237 TTTGAT 4232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159127390840805