Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1307 107 2e-18 >seq1307 Length=69414 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || |||||||| || || || || || || | ||||| || | || || Sbjct 39088 CACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGACAGTGTCCGCCCATCCTC 39029 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCA 39193 ||||||||||| ||||| || || ||||| |||| ||||||| | | ||| |||||| Sbjct 39028 CAGCTGTTTGCCTGCAAAGATCAGGCGCTGTTGGTCCGGTGGG-ATACCCTCCTTGTCCT 38970 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| ||| |||| | | | ||| || ||| || || |||| ||||| | | Sbjct 38969 GGATCTTCGCCTTGACATTGTCTATCGTGTCTGACGATTCGACTTCCAGTGTGATGGTCT 38910 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| || || |||||||| ||||| Sbjct 38909 TTCCGGTCAGGGTCTTCACAAAGATCTGCAT 38879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429536925460841