Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1307 105 5e-18 seq1188 84.2 1e-11 >seq1307 Length=69414 Score = 105 bits (116), Expect = 5e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || ||| | || || || || |||||||||||||| || || | Sbjct 38651 ATGCAAATCTTCGTCAAGACCTTGACAGGCAAGACCATCACTCTCGAAGTAGAATCTTCA 38710 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | || |||||||| | || || || || Sbjct 38711 GACACAATCGACAATGTCAAGGCCAAGA-TACAAGATAAAGAAGGCATCCCCCCGGACCA 38769 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| || || || |||||||||||| | ||||| | ||||| | ||| ||||| Sbjct 38770 ACAGCGCTTGATCTTCGCCGGCAAACAATTAGAAGATGGCCGCACACTCTCCGACTACAA 38829 Query 23790 CATACAAAAAGAGTCCACATTACAT 23814 ||| || ||||| ||||| ||||| Sbjct 38830 CATCCAGAAAGAATCCACCCTACAT 38854 Score = 98.7 bits (108), Expect = 7e-16 Identities = 134/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 23621 TCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTG 23680 |||| || ||||| || || || || || || || || || || || ||||||| | | Sbjct 38433 TCGTCAAGACCCTGACTGGCAAGACCATTACCCTGGAGGTGGAGTCTTCGGACACCATCG 38492 Query 23681 AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAA 23740 | | |||| || ||| |||||||| ||| | || || |||||||||||| | | Sbjct 38493 ACAATGTAAAGGCCAAGATTCAGGACAAAGAGGGTATCCCTCCCGATCAACAGCGTCTCA 38552 Query 23741 TATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAG 23800 | || |||||||| || || ||||||| || ||| | ||| |||||||| ||||| | Sbjct 38553 TCTTCGCCGGCAAGCAGCTCGAAGACGGCCGTACTCTCTCCGACTACAACATCCAAAAGG 38612 Query 23801 AGTCCAC 23807 | ||||| Sbjct 38613 AATCCAC 38619 >seq1188 Length=31586 Score = 84.2 bits (92), Expect = 1e-11 Identities = 128/180 (71%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 23620 TTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTT 23679 ||||| |||||||| ||||| || || ||||||||||| || || ||| | ||||| | Sbjct 1537 TTCGTCAAAACCCTGACGGGCAAGACCATCACTCTCGAGGTCGAATCCTCCGACACCATC 1478 Query 23680 GA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTT 23738 || ||| | || | || || ||||| || || | ||||| || || ||||| || Sbjct 1477 GACAATGTCAAGGC-CAAGATCCAGGACAAGGAGGGGATCCCGCCGGACCAGCAGCGCTT 1419 Query 23739 AATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAA 23798 || || || ||||| || || || |||| | || || ||||||| ||||| || || Sbjct 1418 GATCTTCGCGGGCAAGCAGCTCGAGGACGGGAGGACCTTGAGCGATTATAACATCCAGAA 1359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338002774001756