Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1307 140 8e-28 seq1609 134 3e-26 seq1188 134 3e-26 seq59 105 2e-17 >seq1307 Length=69414 Score = 140 bits (154), Expect = 8e-28 Identities = 145/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| || || ||||||||||| ||||||| ||||| |||| | ||| | || ||| Sbjct 38634 AGGACGAGATGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCT 38575 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || ||||| ||||| || ||||| || ||||| Sbjct 38574 TCGAGCTGCTTGCCGGCGAAGATGAGACGCTGTTGATCGGGAGGGATACCCTCTTTGTCC 38515 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| ||| ||||||||||| || | ||||| || | || || ||| Sbjct 38514 TGAATCTTGGCCTTTACATTGTCGATGGTGTCCGAAGACTCCACCTCCAGGGTAATGGTC 38455 Query 225682 TTGCCCGTCA 225691 ||||| |||| Sbjct 38454 TTGCCAGTCA 38445 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| || || || ||||||||||| |||| ||||| |||| | || | |||||| Sbjct 38862 AGGACGAGATGTAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGTGTGCGGCCATCT 38803 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 |||| || || || |||||||| | || |||||||| || || || ||||| || ||| Sbjct 38802 TCTAATTGTTTGCCGGCGAAGATCAAGCGCTGTTGGTCCGGGGGGATGCCTTCTTTATCT 38743 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| ||| ||||| |||||||| | ||| || || | ||||| ||| Sbjct 38742 TGTATCTTGGCCTTGACATTGTCGATTGTGTCTGAAGATTCTACTTCGAGAGTGATGGTC 38683 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| || || | ||| | |||||| Sbjct 38682 TTGCCTGTCAAGGTCTTGACGAAGATTTGCAT 38651 Score = 136 bits (150), Expect = 9e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| | ||| |||||||| || || || | |||||| ||| ||| || Sbjct 38364 ACGAAGACGGAGGACCAAGTGAAGAGTGGACTCCTTCTGAATATTGTAGTCGCTCAAGGT 38305 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| ||||| ||||| || || ||||| || || ||||| || Sbjct 38304 GCGACCGTCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGTTGATCCGGGGGAATTCC 38245 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| |||||||| ||| || ||||| ||||| |||| ||||| || | Sbjct 38244 TTCCTTGTCCTGGATCTTGGCCTTGACGTTATCGATCGTGTCGGAGGACTCCACCTCAAG 38185 Query 225672 CGTGATCGTCTTGCCCGT 225689 ||||| |||||||| || Sbjct 38184 GGTGATGGTCTTGCCAGT 38167 >seq1609 Length=13884 Score = 134 bits (148), Expect = 3e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 ||||||| || |||||| ||| || ||||| || || |||||||| || |||||||| Sbjct 498 TTTTGGATGTTATAATCGCTCAAGGTCCTCCCGTCCTCGAGCTGCTTGCCCGCGAAGATC 439 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 | || || ||||| ||||| || || |||||||| |||||||| ||| ||| ||| Sbjct 438 AAGCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCG 379 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 |||||||| |||| || || || | ||||| ||||||||||||| ||||| | ||| Sbjct 378 ATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTTTTGACGAA 320 >seq1188 Length=31586 Score = 134 bits (148), Expect = 3e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| || |||||| ||| || ||||| || || |||||||| || |||||||| Sbjct 1359 TTCTGGATGTTATAATCGCTCAAGGTCCTCCCGTCCTCGAGCTGCTTGCCCGCGAAGATC 1418 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 | || || ||||| ||||| || || |||||||| |||||||| ||| ||| ||| Sbjct 1419 AAGCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCG 1478 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 |||||||| |||| ||| || || | ||||| ||||||||||||| ||||| | ||| Sbjct 1479 ATGGTGTCGGAGGATTCGACCTCGAGAGTGATGGTCTTGCCCGTCAGGGTTTTGACGAA 1537 >seq59 Length=11125 Score = 105 bits (116), Expect = 2e-17 Identities = 97/123 (79%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 225504 GACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTC 225563 ||| |||||||| ||||| || ||||||| |||||| || | | ||| | || || || Sbjct 4354 GACCAGGTGGAGCGTGGACTCCTTTTGGATATTGTAGTCTGAGAGAGTGCGACCGTCCTC 4295 Query 225564 TAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTG 225623 |||||||| || |||||||| || ||||| ||||| || || || ||||||||||||| Sbjct 4294 GAGCTGCTTGCCCGCGAAGATCAGGCGTTGCTGGTCAGGTGGGATTCCTTCCTTGTCTTT 4235 Query 225624 GAT 225626 ||| Sbjct 4234 GAT 4232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192505882189958