Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq1121 100 2e-16 seq379 82.4 6e-11 >seq1121 Length=34987 Score = 100 bits (110), Expect = 2e-16 Identities = 143/200 (72%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 29622 TGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCAT 29681 |||||||||| |||||||| ||| | || | || ||||| ||||| || |||||||||| Sbjct 25490 TGGGCTCCCTTTCGAGCTGGATCTTGAGAGCATCGACGTGATCAAGATACACGTGAGCAT 25549 Query 29682 CTCCCAGGGTGTGGA-CAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTAC 29740 | |||| ||| || | || | | | || || || | ||| ||||| ||||| Sbjct 25550 CACCCATGGTATGAATCAGAGTGCCGGGGGTC-AGGTYGCATACGGCAGCCAGCATGTGG 25608 Query 29741 GTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTC 29800 || | | | ||| || ||||| ||||| || ||||| ||||| || | |||||| Sbjct 25609 GTCARTAAGGCGTATGAAGCAATGTTGAAGGGTACACCGAGTCCCATATCGCACGACCTC 25668 Query 29801 TGGTAGAGCTGGCACGAGAG 29820 || || |||||||| ||||| Sbjct 25669 TGATAAAGCTGGCATGAGAG 25688 >seq379 Length=117818 Score = 82.4 bits (90), Expect = 6e-11 Identities = 133/183 (73%), Gaps = 14/183 (8%) Strand=Plus/Plus Query 53495 GTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCATCCTT- 53553 |||||||| | |||| || ||| | || |||| |||||||||||||| ||| Sbjct 85420 GTCAAGGTTCGCATGAGAACGACCAAGATTCCCCAGATTGGCGACAAGTTTGCTTCCAGG 85479 Query 53554 CACGGCGCAAAAGGGGACATGCGGAGCGG--TC-CTGACT--CAGGAGGACATGCCCTTC 53608 ||||| || || ||||| || ||| || || || |||||||||||||| ||| Sbjct 85480 CACGGT-CAGAAAGGGAC-----GATCGGCATCACTTACCGCCAGGAGGACATGCCTTTC 85533 Query 53609 GACAAG-GACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGAT 53667 || || || || |||||||| ||||| |||||||||||||| || |||| || | || Sbjct 85534 -ACTAGTGAAGGCGTGGTGCCAGACCTGATCATCAACCCCCATGCTATTCCTTCGCGAAT 85592 Query 53668 GAC 53670 ||| Sbjct 85593 GAC 85595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406154997661102