Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1499 109 5e-19 >seq1499 Length=34637 Score = 109 bits (120), Expect = 5e-19 Identities = 309/460 (67%), Gaps = 16/460 (3%) Strand=Plus/Plus Query 4248 ACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAAC 4307 ||||| |||||| || || || || || || |||||||| || ||||| | | Sbjct 5681 ACACCTGCTTTTTGATAATCACCAACGCGTTTCTCAAAGAAATTGGTCTTGCCCGCCAGA 5740 Query 4308 GAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCA-CACTTTAG 4366 || || ||||| || ||||||||||| || || ||||||| |||| | || || Sbjct 5741 GAGATGGACTCCATGAAGTCAAACGGATTCGTCGCTTTGTAATACTTTTGATTACCCAAG 5800 Query 4367 AGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGA-GTTCGCAGTTAA 4425 || | |||| |||||| || || ||||| || || || |||||| ||| || ||| | Sbjct 5801 -GCGAGCAGCAGTCGGTCGGCCACGAATTCGATGTATTGCTTCATGAGGTTTGC-GTTCA 5858 Query 4426 TTCCAATTAATCTCACA-GGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCT 4484 | || | || | |||| |||| || | |||||||| || || || || | || ||| Sbjct 5859 TGCCCAATAGAC-CACAGGGTAAAGCCTCCGTCAAAAATTCCTGCTCGATGCTGACAGCT 5917 Query 4485 TCTGTGATTATATCTTTTATTTTATCTTTAGA-TGG---TTTATTTACTAAGTATCCAAA 4540 || ||||| | || | | || || ||| | || || || | || Sbjct 5918 TCGGTGATGACGTCCTGCA--CGGCCTGCGGACTGGGGCGGTGCTT--TAGGTGTGAGAA 5973 Query 4541 CAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAA 4599 || | ||| ||||| ||| |||| || || || | || | || |||||||| |||| Sbjct 5974 CAGGAGACAAGCAAAGTCAGTGTGCATTCCCTCATC-CCGCGAGATGAGTTCGTTGGAAA 6032 Query 4600 ACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAG 4659 | || | |||||||| | ||| | ||| || ||||| || | | |||||||| |||| Sbjct 6033 AGGTCAGACCGGGCATCAGACCACGCTTCTTCAGCCAGAAGACCGATGCAAATGAGCCAG 6092 Query 4660 AAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCG 4699 | ||||| ||||| || || || ||||| || || | ||| Sbjct 6093 AGAAGAAGATGCCCTCGACTGCAGCAAAAGCGACAAGTCG 6132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427040975866781