Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq379 82.4 6e-11 >seq379 Length=117818 Score = 82.4 bits (90), Expect = 6e-11 Identities = 132/181 (73%), Gaps = 8/181 (4%) Strand=Plus/Plus Query 48511 GTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGTGACAAGTTTGCGTCCTT- 48569 |||||||| | |||| || ||| | || |||| || ||||||||||| ||| Sbjct 85420 GTCAAGGTTCGCATGAGAACGACCAAGATTCCCCAGATTGGCGACAAGTTTGCTTCCAGG 85479 Query 48570 CACGGCGCAAAAGGGGAC-ATGTGGAGC-CGTCCTGACCCAGGAGGACATGCCCTTCGAC 48627 ||||| || || ||||| || | | | | | | | ||||||||||||||| ||| || Sbjct 85480 CACGGT-CAGAAAGGGACGATCGGCATCACTTACCG--CCAGGAGGACATGCCTTTC-AC 85535 Query 48628 AAG-GACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGAC 48686 || || || |||||||| ||||| |||||||||||||| || |||| || | ||||| Sbjct 85536 TAGTGAAGGCGTGGTGCCAGACCTGATCATCAACCCCCATGCTATTCCTTCGCGAATGAC 85595 Query 48687 C 48687 | Sbjct 85596 C 85596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369499737917567