Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq40 159 5e-34 >seq40 Length=17677 Score = 159 bits (176), Expect = 5e-34 Identities = 375/566 (66%), Gaps = 0/566 (0%) Strand=Plus/Plus Query 77964 TCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCA 78023 || || ||||||||||| | ||| ||||||| | | ||||| ||||| |||||||| Sbjct 2317 TCGTTAGGGCACATCAAAGTCCACTCACCATTGGCTTCGACTCGCTTCATGAAGAGATCC 2376 Query 78024 GGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTT 78083 || ||||| || |||| ||||||||||| | | |||||| || || |||||| Sbjct 2377 GGGATCCAAAGGGCAAAGAATAGATCTCGAGCGCGGACTTCTTCCTTGCCGTGATTCTTC 2436 Query 78084 TTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACT 78143 | ||| || || || | | || | ||||||||| || || || || || | | || Sbjct 2437 CGCAAATCCAGGAATTCAAAGACGTCGGCATGCCATGGCTCGAGGTACATGGCGAAAGCT 2496 Query 78144 CCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAAC 78203 || || || || || ||||| ||||| | ||| | ||||||||| || | || | | | Sbjct 2497 CCGGGACGCTTGTTGCCTCCTTGATCGACATAGCGGGCGGTGTTGTTGAAGACGCGTAGC 2556 Query 78204 ATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGA 78263 || |||| ||| || || || | ||||| || || ||||| || | |||||| Sbjct 2557 ATAGGAACAATGCCATTGGAGGAGCCATTGGTGCCCCCGATATACGAGCCTGTAGCGCGA 2616 Query 78264 ATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTC 78323 || ||| | || || || || || |||| || || ||||| || ||| Sbjct 2617 ATGCGGTGGATGTTCAGGCCAATGCCACCGGCAGTCTTCGAGATGAGAGCACACGTTTTG 2676 Query 78324 AATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGAC 78383 | || |||||||| || || ||||| || ||| |||||| | | || || ||| Sbjct 2677 AGGGTGTCGTAGATGCCGTCGATACTATCCTCCTTCATGTCGATCAAGAAGCATGAGGAC 2736 Query 78384 ATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTT 78443 || ||| | || || || ||||| || || || || || || || || || |||| Sbjct 2737 ATCTGAGGCTGTGGGGTGCCAGCATTGAACAAGGTAGGGGACGCGTGGGTGAAGTATTTC 2796 Query 78444 TCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACC 78503 | ||| | |||| ||| || || || | || |||| | || || || || Sbjct 2797 TGAGACATGAGATGGTAGGTCTCGATGACCTTGTCGATGTTGTCGTCGTGTATACCCACA 2856 Query 78504 GCTACACGCATCAACATATGCTGAGG 78529 || |||||||| | ||| ||||| || Sbjct 2857 GCGACACGCATAATCATGTGCTGTGG 2882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694654411672480