Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq40 192 8e-44 >seq40 Length=17677 Score = 192 bits (212), Expect = 8e-44 Identities = 409/611 (67%), Gaps = 0/611 (0%) Strand=Plus/Plus Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579 || || || || || ||| ||| | | ||| ||| || || || |||||||| | | Sbjct 2278 TCGAACTCGTCCCCATAAATATCTGCAAGACCCGGAGCCTCGTTAGGGCACATCAAAGTC 2337 Query 76580 CACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 76639 |||||||||| | | || || ||||| |||||||| || ||||| || |||| ||| Sbjct 2338 CACTCACCATTGGCTTCGACTCGCTTCATGAAGAGATCCGGGATCCAAAGGGCAAAGAAT 2397 Query 76640 AGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATA 76699 |||||||| | | |||||| || || |||||| | ||| ||||| || | Sbjct 2398 AGATCTCGAGCGCGGACTTCTTCCTTGCCGTGATTCTTCCGCAAATCCAGGAATTCAAAG 2457 Query 76700 ATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCC 76759 | || | ||||||||| || || || || || | | | || || || || || ||||| Sbjct 2458 ACGTCGGCATGCCATGGCTCGAGGTACATGGCGAAAGCTCCGGGACGCTTGTTGCCTCCT 2517 Query 76760 TGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGAT 76819 ||||| | ||| | ||| ||||| || | || | | ||| |||| |||||| || || Sbjct 2518 TGATCGACATAGCGGGCGGTGTTGTTGAAGACGCGTAGCATAGGAACAATGCCATTGGAG 2577 Query 76820 GTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCT 76879 | ||||| || || ||||| || || ||||| || ||||| Sbjct 2578 GAGCCATTGGTGCCCCCGATATACGAGCCTGTAGCGCGAATGCGGTGGATGTTCAGGCCA 2637 Query 76880 ATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCT 76939 || || || || | || ||||| |||||||| ||| | ||||| |||||||| || Sbjct 2638 ATGCCACCGGCAGTCTTCGAGATGAGAGCACACGTTTTGAGGGTGTCGTAGATGCCGTCG 2697 Query 76940 ATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCT 76999 |||||||| ||| |||||| | | || || ||||| ||| | || || || Sbjct 2698 ATACTATCCTCCTTCATGTCGATCAAGAAGCATGAGGACATCTGAGGCTGTGGGGTGCCA 2757 Query 77000 GCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTT 77059 ||||| ||||| ||||| || || || ||||| |||| | ||| | |||| ||| || Sbjct 2758 GCATTGAACAAGGTAGGGGACGCGTGGGTGAAGTATTTCTGAGACATGAGATGGTAGGTC 2817 Query 77060 TCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGC 77119 || || || || || | | || || || |||||||||||||| | ||| ||| Sbjct 2818 TCGATGACCTTGTCGATGTTGTCGTCGTGTATACCCACAGCGACACGCATAATCATGTGC 2877 Query 77120 TGAGGTCGTTC 77130 || || || || Sbjct 2878 TGTGGACGCTC 2888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712919633346240